Pedro Mendes - Dissemin

Papers authored by Pedro Mendes

This paper is available in a repository.

2009 Valerie Hower, Pedro Mendes

, Frank M. Torti, Reinhard Laubenbacher, Steven Akman, Vladmir Shulaev, Suzy V. Torti

A General Map of Iron Metabolism and Tissue-specific Subnetworks

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Stefan Hoops, Pedro Hoops S. Sahle S. Gauges R. Dada J. Kummer U. Mendes

, Sven Sahle, Ralph Gauges, Joseph Dada, Ursula Kummer

Computational Modeling of Biochemical Networks Using COPASI

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Distributing this paper is prohibited by the publisher

Pedro Mendes

, Hanan Messiha, Naglis Malys, Stefan Hoops

Chapter 22 Enzyme Kinetics and Computational Modeling for Systems Biology

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2008 M. J. Herrg\aa{}rd, Hans W. Westerhoff, K. Yalçin Arga, Markus J. Herrgård, Neil Swainston, Paul Dobson, Warwick B. Dunn, K. Yalçin Arga

, Yalcin K. Arga, Mikko Arvas, Nils Blüthgen, Nils Buthgen, Simon Borger, Roeland Costenoble, Roeland Coestenoble and 33 other authors

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

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This paper is made freely available by the publisher.

Sven Sahle, Pedro Mendes

, Stefan Hoops, Ursula Kummer

A new strategy for assessing sensitivities in biochemical models

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Douglas B. Kell, Pedro Mendes

The markup is the model: reasoning about systems biology models in the Semantic Web era.

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Max Flöttmann, Jörg Schaber, Stephan Hoops, Edda Klipp, Pedro Mendes

ModelMage: a tool for automatic model generation, selection and management

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2007 Diogo Camacho, Paola Vera Licona, Pedro Mendes

, Reinhard Laubenbacher

Comparison of reverse-engineering methods using an in silico network.

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Teresa Fan, Susanna-Assunta Nikolau B. van Ommen B. Kristal B. S. Taylor C. Robertson D. Lindon J. Griffin J. L. Sumner L. W. der Werf M. Hardy N. W. Morrison N. Mendes P. Kaddurah-Daouk R. Goodacre R. Fan T. & Fiehn O. Sansone, Royston Goodacre, Julian L. Griffin, Nigel W. Hardy, Rima Kaddurah-Daouk, Bruce S. Kristal, John Lindon, Pedro Mendes

, Lloyd W. Sumner, Norman Morrison, Basil Nikolau, Chris Taylor, Don Robertson, Mariët van der Werf and 2 other authors

The Metabolomics Standards Initiative

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In??s D. S. Henriques, Diana S. Aga, Pedro Mendes

, Seamus K. O'Connor, Nancy G. Love

Metabolic footprinting: a new approach to identify physiological changes in complex microbial communities upon exposure to toxic chemicals.

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2006 Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes

, Ursula Kummer

COPASI - a COmplex PAthway SImulator

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Pedro Mendes

Metabolomics and the challenges ahead

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Maria Rodriguez-Fernandez, Pedro Mendes

, Julio R. Banga

A hybrid approach for efficient and robust parameter estimation in biochemical pathways.

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2005 Nicolas Le Novère, Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes

, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep

and 2 other authors

Minimum information requested in the annotation of biochemical models (MIRIAM)

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2004 Hideyuki Suzuki, M. S. Srinivasa Reddy, Marina A. Naoumkina, Naveed Aziz, Gregory D. May, David V. Huhman, Lloyd W. Sumner, Jack W. Blount, Pedro Mendes

, Richard A. Dixon

Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula.

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Corey D. Broeckling

, David V. Huhman, Mohamed A. Farag, Joel T. Smith, Gregory D. May, Pedro Mendes

, Richard A. Dixon, Lloyd W. Sumner

Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism.

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Raoul J. Bino, Robert D. Hall, Oliver Fiehn, Joachim Kopka, Kazuki Saito, John Draper, Basil J. Nikolau, Pedro Mendes

, Ute Roessner-Tunali, Michael H. Beale, Richard N. Trethewey, B. Markus Lange, Eve Syrkin Wurtele

, Lloyd W. Sumner

Potential of metabolomics as a functional genomics tool

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Alberto de la Fuente, Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes

Discovery of meaningful associations in genomic data using partial correlation coefficients

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Helen Ann Jenkins, B. Markus Lange, Nigel William Hardy, Manfred Beckmann, John Draper, Aileen Roberta Smith, Janet Taylor, Oliver Fiehn, Royston Goodacre, Raoul J. Bino, Robert D. Hall, Joachim Kopka, Geoffrey A. Lane, B. Markus Lange, Jang R. Liu and 16 other authors

A proposed framework for the description of plant metabolomics experiments and their results.

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2003 Lloyd W. Sumner, Pedro Mendes

, Richard A. Dixon

Plant metabolomics: large-scale phytochemistry in the functional genomics era

Download from digital.library.unt.edu

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Papers authored by Pedro Mendes