All papers authored by Sean Eddy
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Eric P. Nawrocki ,
Nancy Ontiveros-Palacios ,
Joanna Argasinska ,
Kevin Lamkiewicz ,
Manja Marz ,
Sam Griffiths-Jones ,
Claire Toffano-Nioche ,
Daniel Gautheret ,
Zasha Weinberg ,
Elena Rivas ,
Sean R. Eddy ,
Robert D. Finn ,
Alex Bateman ,
Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
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Aurélien Luciani ,
Sean R. Eddy ,
Youngmi Park,
Rodrigo Lopez,
Robert D. Finn
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Joanna Argasinska ,
Natalia Quinones-Olvera ,
Eric P. Nawrocki ,
Elena Rivas ,
Sean R. Eddy ,
Alex Bateman ,
Robert D. Finn ,
Anton I. Petrov
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
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Joseph R. Ecker,
Jeremy Nathans
Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
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Sean R. Eddy
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Homology searches for structural RNAs: from proof of principle to practical use
Download from rnajournal.cshlp.org
Computational Analysis of Conserved RNA Secondary Structure in Transcriptomes and Genomes
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Infernal 1.1: 100-fold faster RNA homology searches
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nhmmer: DNA homology search with profile HMMs
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Computational identification of functional RNA homologs in metagenomic data
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Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed
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Alex Bateman ,
Marco Punta
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
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Robert Hubley,
Thomas A. Jones,
Jerzy Jurka,
Arian F. A. Smit,
Robert D. Finn
Dfam: a database of repetitive DNA based on profile hidden Markov models
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Eric P. Nawrocki,
Sean R. Eddy ,
Paul P. Gardner,
Alex Bateman
Rfam 11.0: 10 years of RNA families
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Cell type–specific genomics of Drosophila neurons
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