Papers authored by Shane A. McCarthy
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Nathan Vranken ,
Carla Hoge ,
Madison R. Lichak,
Amy L. Norovich ,
Kerel X. Francis ,
Julia Camacho-Garcia ,
Iliana Bista ,
Jonathan Wood ,
Shane McCarthy ,
William Chow ,
Heok Hui Tan ,
Kerstin Howe ,
Sepalika Bandara,
Johannes von Lintig
and 4 other authors
Genomic consequences of domestication of the Siamese fighting fish
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Rob Ogden ,
Anna Meredith,
Gabriela Peniche,
Michelle Smith,
Craig Corton,
Karen Oliver,
Jason Skelton,
Emma Betteridge,
Jale Doulcan ,
Nadine Holmes,
Victoria Wright ,
Matt Loose ,
Michael A. Quail,
Shane A. McCarthy
and 7 other authors
The genome sequence of the European golden eagle, Aquila chrysaetos chrysaetos Linnaeus 1758
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James K. Bonfield ,
Jennifer Liddle ,
John Marshall ,
Valeriu Ohan ,
Martin O. Pollard ,
Andrew Whitwham ,
Thomas Keane ,
Shane A. McCarthy ,
Robert M. Davies ,
Heng Li
Twelve years of SAMtools and BCFtools
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Shane A. McCarthy ,
McCarthy Sa,
Ruoyun Hui ,
Hui R.,
Mohamed A. Almarri ,
Almarri Ma,
Ayub Q.,
Qasim Ayub ,
Petr Danecek ,
Danecek P.,
Yuan Chen
and 27 other authors
Insights into human genetic variation and population history from 929 diverse genomes
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Frank Hailer ,
Elisabeth Chadwick,
Roberto Portela Miguez ,
Michelle Smith,
Craig Corton,
Karen Oliver,
Jason Skelton,
Emma Betteridge,
Jale Doulcan Doulcan ,
Olga Dudchenko,
Arina Omer,
David Weisz,
Erez Lieberman Aiden,
Shane McCarthy
and 7 other authors
The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758
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Kathryn Fingland ,
Rachel Cripps,
Roberto Portela Miguez ,
Michelle Smith,
Craig Corton,
Karen Oliver,
Jason Skelton,
Emma Betteridge,
Jale Doulcan ,
Michael A. Quail,
Shane A. McCarthy ,
Kerstin Howe ,
Ying Sims,
James Torrance
and 4 other authors
The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788
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Kathryn Fingland ,
Rachel Cripps,
Roberto Portela Miguez ,
Michelle Smith,
Craig Corton,
Karen Oliver,
Jason Skelton,
Emma Betteridge,
Jale Dolucan ,
Olga Dudchenko,
Arina D. Omer,
David Weisz,
Erez Lieberman Aiden,
Olivier Fedrigo
and 10 other authors
The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758
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Shane A. McCarthy ,
Jonathan Wood ,
Kerstin Howe ,
Yadong Wang,
Richard Durbin
Identifying and removing haplotypic duplication in primary genome assemblies
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Shane A. McCarthy ,
Richard A. Durbin
Crumble: reference free lossy compression of sequence quality values
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Shane A. McCarthy
BCFtools/csq: haplotype-aware variant consequences
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Matti Pirinen,
Shane McCarthy ,
Klaudia Walter ,
Seppo Koskinen,
Veikko Salomaa,
Mark Daly,
Richard Durbin ,
Aarno Palotie,
Tero Aittokallio,
Samuli Ripatti
Download from doi.org
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Richard Durbin,
Kevin Talbot,
Michele Hu,
Caleb Webber ,
Chris P. Ponting,
Richard Wade-Martins
Whole-exome sequencing of 228 patients with sporadic Parkinson’s disease
Download from dx.doi.org
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Tariq Ahmad,
Cathryn Edwards ,
Eva Goncalves Serra,
Ailsa Hart,
Chris Hawkey,
John C. Mansfield,
Craig Mowat
and 16 other authors
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Rodriguez Flores Jl,
Ritchie Gr
and 473 other authors
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.
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Narasimhan Vm,
Christopher L. Baker,
Konrad J. Karczewski ,
Hunt Ka,
Dan Mason,
Michael R. Barnes,
Anthony H. Barnett,
Nicholas A. Bockett,
Monkol Lek,
Baker Cl
and 30 other authors
Health and population effects of rare gene knockouts in adult humans with related parents
Download from science.sciencemag.org
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Martin O. Pollard ,
Qasim Ayub ,
Stephen Wilcox,
Leah Wilcox,
Peter McAllister,
Lesley Williams,
Yali Xue,
R. John Mitchell,
Chris Tyler-Smith
Deep Roots for Aboriginal Australian Y Chromosomes
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A reference panel of 64,976 haplotypes for genotype imputation
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A global reference for human genetic variation
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Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
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