Ye Mei - Dissemin

Papers authored by Ye Mei

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2014 Yongxiu Li, John Z. H. Zhang, Ye Mei

Molecular Dynamics Simulation of Protein Crystal with Polarized Protein-Specific Force Field

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Changge Ji, Ye Mei

Some Practical Approaches to Treating Electrostatic Polarization of Proteins

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Lirong Mou, Xiangyu Jia

, Ya Gao, Yongxiu Li, John Z. H. Zhang, Ye Mei

Folding simulation of Trp-cage utilizing a new AMBER compatible force field with coupled main chain torsions

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Li L. Duan, Ye Mei

, Qing G. Zhang, Bo Tang, John Z. H. Zhang

Protein's native structure is dynamically stabilized by electronic polarization

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Bingbing Lin, Ya Gao, Yongxiu Li, John Z. H. Zhang, Ye Mei

Implementing electrostatic polarization cannot fill the gap between experimental and theoretical measurements for the ultrafast fluorescence decay of myoglobin

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Gerhard König

, Frank C. Pickard

, Ye Mei

, Bernard R. Brooks

Predicting hydration free energies with a hybrid QM/MM approach: An evaluation of implicit and explicit solvation models in SAMPL4

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Xiangyu Jia

, Juan Zeng, John Z. H. Zhang, Ye Mei

Accessing the applicability of polarized protein-specific charge in linear interaction energy analysis

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Chang G. Ji, Ye Mei

, John Z. H. Zhang

Protein structure and dynamics-polarization in MD simulation

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2013 Xiaoliang Lu, Juan Zeng, Ya Gao, John Z. H. Zhang, Dawei Zhang, Ye Mei

The intrinsic helical propensities of the helical fragments in prion protein under neutral and low pH conditions: a replica exchange molecular dynamics study

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Juan Zeng, Xiangyu Jia

, John Z. H. Zhang, Ye Mei

The F130L mutation in streptavidin reduces its binding affinity to biotin through electronic polarization effect

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Man Guo, Ye Mei

Equilibrium and folding simulations of NS4B H2 in pure water and water/2,2,2-trifluoroethanol mixed solvent: examination of solvation models

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Yongxiu Li, Ya Gao, Xuqiang Zhang, Xingyu Wang, Lirong Mou, LiLi Duan, Xiao He, Ye Mei

, John Z. H. Zhang

A coupled two-dimensional main chain torsional potential for protein dynamics: generation and implementation

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Li L. Duan, Tong Zhu, Ye Mei

, Qing G. Zhang, Bo Tang, John Z. H. Zhang

An implementation of hydrophobic force in implicit solvent molecular dynamics simulation for packed proteins

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Xiangyu Jia

, John Z. H. Zhang, Ye Mei

Assessing the accuracy of the general AMBER force field for 2,2,2-trifluoroethanol as solvent

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Xiangyu Jia

, Xianwei Wang, Jinfeng Liu, John Z. H. Zhang, Ye Mei

, Xiao He

An improved fragment-based quantum mechanical method for calculation of electrostatic solvation energy of proteins

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Ya Gao, Xiaoliang Lu, Lili Duan, Dawei Zhang, Ye Mei

, John Z. H. Zhang

Direct folding simulation of a long helix in explicit water

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2012 Juan Zeng, LiLi Duan, John Z. H. Zhang, Ye Mei

A numerically stable restrained electrostatic potential charge fitting method

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This paper is made freely available by the publisher.

Shuang Ren, Juan Zeng, Ye Mei

, John Z. H. Zhang, S. Frank Yan, Jian Fei, Li Chen

Discovery and Characterization of Novel, Potent, and Selective Cytochrome P450 2J2 Inhibitors

Download from dmd.aspetjournals.org

Ya Gao, Man Guo, Ye Mei

, John Z. H. Zhang

Protein–water hydrogen bonds are stabilized by electrostatic polarization

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Ye Mei

, Yong L. Li, Juan Zeng, John Z. H. Zhang

Electrostatic polarization is critical for the strong binding in streptavidin-biotin system

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Papers authored by Ye Mei