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Papers authored by Alistair Forrest

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2015 Vanja Haberle

ORCID

, Alistair R. R. Forrest

ORCID

, Yoshihide Hayashizaki, Piero Carninci, Boris Lenhard

ORCID

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

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Cong Liang

ORCID

, Fantom Consortium, Günter P. Wagner

ORCID

, Forrest Ar, Alistair R. R. Forrest

ORCID

, Wagner Gp

The statistical geometry of transcriptome divergence in cell-type evolution and cancer

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2014 Alexandre Fort, Kosuke Hashimoto, Daisuke Yamada, Md Salimullah, Chaman A. Keya, Alka Saxena, Alessandro Bonetti, Irina Voineagu, Nicolas Bertin

ORCID

, Anton Kratz, Yukihiko Noro, Chee-Hong Wong, Michiel de Hoon, Robin Andersson

ORCID

, Albin Sandelin and 6 other authors

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

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Adam J. Sardar, Matt E. Oates

ORCID

, Hai Fang, Alistair R. R. Forrest

ORCID

, Hideya Kawaji, Fantom Consortium, Julian Gough, Owen J. L. Rackham

The Evolution of Human Cells in Terms of Protein Innovation

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Alistair R. R. Forrest

ORCID

, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann

ORCID

, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson

ORCID

, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier

ORCID

, Nicolas Bertin

ORCID

and 246 other authors

A promoter-level mammalian expression atlas

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Christine Wells, Dipti Vijayan, Ernst Wolvetang, Jessica Severin, Marina Lizio, Jayson Harshbarger

ORCID

, Anthony Beckhouse, Hideya Kawaji, Elizabeth Mason, Carsten O. Daub, Consortium Fantom, Kelly Hitchens, Yoshihide Hayashizaki, Kim-Anh Le Cao, Nicolas Bertin

ORCID

and 4 other authors

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

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Michiel J. L. de Hoon, David A. de Lima Morais, Erik van Nimwegen, Marc van de Wetering, Linda M. van den Berg, Silvia Zucchelli, Takahiro Suzuki, Sebastian Schmeier, Christian Schmid, Ulf Schaefer, Charles Plessy, Morana Vitezic, Jessica Severin, Colin A. Semple, Robin Andersson

ORCID

and 271 other authors

An atlas of active enhancers across human cell types and tissues

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2012 Claudia Carrieri, Laura Cimatti, Marta Biagioli, Anne Beugnet, Silvia Zucchelli, Stefania Fedele, Elisa Pesce, Isidre Ferrer, Licio Collavin, Claudio Santoro, Forrest Ar, {Alistair R. R.} Forrest, Alistair R. R. Forrest

ORCID

, Piero Carninci, Stefano Biffo and 2 other authors

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

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Masayoshi Itoh, Miki Kojima, Sayaka Nagao-Sato, Eri Saijo, Timo Lassmann

ORCID

, Mutsumi Kanamori-Katayama, Ai Kaiho, Marina Lizio, Hideya Kawaji, Piero Carninci, Alistair R. R. Forrest

ORCID

, Yoshihide Hayashizaki

Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer

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Alistair R. R. Forrest

ORCID

Stranded RNA-Seq: Strand-Specific Shotgun Sequencing of RNA

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2011 Mutsumi Kanamori-Katayama, Ai Kaiho, Yuri Ishizu, Yuko Okamura-Oho, Okio Hino, Masaaki Abe, Takumi Kishimoto, Hisahiko Sekihara, Yukio Nakamura, Harukazu Suzuki, Alistair R. R. Forrest

ORCID

, Yoshihide Hayashizaki

LRRN4 and UPK3B Are Markers of Primary Mesothelial Cells

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Yuki Hasegawa, Naoko Takahashi, Alistair R. R. Forrest

ORCID

, Jay W. Shin, Yohei Kinoshita, Harukazu Suzuki, Yoshihide Hayashizaki

CC Chemokine Ligand 2 and Leukemia Inhibitory Factor Cooperatively Promote Pluripotency in Mouse Induced Pluripotent Cells

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Mutsumi Kanamori-Katayama, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann

ORCID

, Shintaro Katayama, Miki Kojima, Nicolas Bertin

ORCID

, Ai Kaiho, Noriko Ninomiya, Carsten O. Daub, Piero Carninci, Alistair R. R. Forrest

ORCID

, Yoshihide Hayashizaki

Unamplified cap analysis of gene expression on a single-molecule sequencer

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2010 Hideya Kawaji, Jessica Severin, Marina Lizio, Alistair R. R. Forrest

ORCID

, Erik van Nimwegen, Michael Rehli, Kate Schroder, Katharine Irvine, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O. Daub

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

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Morana Vitezic, Timo Lassmann

ORCID

, Alistair R. R. Forrest

ORCID

, Masanori Suzuki, Yasuhiro Tomaru, Jun Kawai, Piero Carninci, Harukazu Suzuki, Yoshihide Hayashizaki, Carsten O. Daub

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE

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Timothy Ravasi

ORCID

, Harukazu Suzuki, Carlo Vittorio Cannistraci, Shintaro Katayama, Vladimir B. Bajic, Kai Tan, Altuna Akalin, Sebastian Schmeier

ORCID

, Mutsumi Kanamori-Katayama, Nicolas Bertin

ORCID

, Piero Carninci, Carsten O. Daub, Alistair Raymond Russell Forrest

ORCID

, Julian Gough, Sean Grimmond and 33 other authors

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

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Atsutaka Kubosaki, Gabriella Lindgren, Michihira Tagami, Christophe Simon, Yasuhiro Tomaru, Hisashi Miura, Takahiro Suzuki, Erik Arner, Alistair R. R. Forrest

ORCID

, Katharine M. Irvine, Kate Schroder, Yuki Hasegawa, Mutsumi Kanamori-Katayama, Michael Rehli, David A. Hume and 4 other authors

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

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2009 Alistair Raymond Russell Forrest

ORCID

, M. Kanamori-Katayama, Y. Tomaru, T. Lassmann

ORCID

, N. Ninomiya, Y. Takahashi, M. J. L. de Hoon, Mjl de Hoon, A. Kubosaki, A. Kaiho, M. Suzuki, J. Yasuda, J. Kawai, Y. Hayashizaki, Da A. Hume and 1 other authors

Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation

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Alistair R. R. Forrest

ORCID

, Rehab F. Abdelhamid, Piero Carninci

Annotating non-coding transcription using functional genomics strategies

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Yukari Takahashi, Alistair R. R. Forrest

ORCID

, Emi Maeno, Takehiro Hashimoto, Carsten O. Daub, Jun Yasuda

MiR-107 and MiR-185 Can Induce Cell Cycle Arrest in Human Non Small Cell Lung Cancer Cell Lines

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