All papers authored by Ioannis Xenarios
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2021
Chaoran Chen 
,
Sarah Ann Nadeau ,
Ivan Topolsky ,
Marc Manceau ,
Jana S. Huisman ,
Kim Philipp Jablonski ,
Lara Fuhrmann ,
David Dreifuss ,
Katharina Jahn,
Christiane Beckmann ,
Maurice Redondo,
Christoph Noppen,
Lorenz Risch,
Martin Risch,
Nadia Wohlwend
and 37 other authors
,
Sarah Ann Nadeau ,
Ivan Topolsky ,
Marc Manceau ,
Jana S. Huisman ,
Kim Philipp Jablonski ,
Lara Fuhrmann ,
David Dreifuss ,
Katharina Jahn,
Christiane Beckmann ,
Maurice Redondo,
Christoph Noppen,
Lorenz Risch,
Martin Risch,
Nadia Wohlwend
and 37 other authors
Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland
Download from doi.org
2020
Anne Gleizes,
Florian Laubscher,
Nicolas Guex ,
Christian Iseli ,
Thomas Junier,
Samuel Cordey ,
Jacques Fellay ,
Ioannis Xenarios ,
Laurent Kaiser,
Philippe Le Mercier
,
Christian Iseli ,
Thomas Junier,
Samuel Cordey ,
Jacques Fellay ,
Ioannis Xenarios ,
Laurent Kaiser,
Philippe Le Mercier
Virosaurus A Reference to Explore and Capture Virus Genetic Diversity
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Jerven Bolleman ,
Edouard de Castro ,
Delphine Baratin ,
Sebastien Gehant ,
Beatrice A. Cuche ,
Andrea H. Auchincloss ,
Elisabeth Coudert ,
Chantal Hulo ,
Patrick Masson ,
Ivo Pedruzzi ,
Catherine Rivoire ,
Ioannis Xenarios ,
Nicole Redaschi ,
Alan Bridge
,
Edouard de Castro ,
Delphine Baratin ,
Sebastien Gehant ,
Beatrice A. Cuche ,
Andrea H. Auchincloss ,
Elisabeth Coudert ,
Chantal Hulo ,
Patrick Masson ,
Ivo Pedruzzi ,
Catherine Rivoire ,
Ioannis Xenarios ,
Nicole Redaschi ,
Alan Bridge
HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes
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2019
Pierre‐Olivier Duroy ,
Sandra Bosshard ,
Emanuel Schmid‐Siegert ,
Samuel Neuenschwander,
Ghislaine Arib,
Philippe Lemercier,
Jacqueline Masternak,
Lucien Roesch,
Flavien Buron,
Pierre‐Alain Girod,
Ioannis Xenarios ,
Nicolas Mermod
Download from onlinelibrary.wiley.com
,
Sandra Bosshard ,
Emanuel Schmid‐Siegert ,
Samuel Neuenschwander,
Ghislaine Arib,
Philippe Lemercier,
Jacqueline Masternak,
Lucien Roesch,
Flavien Buron,
Pierre‐Alain Girod,
Ioannis Xenarios ,
Nicolas Mermod
Download from onlinelibrary.wiley.com
2017
Chantal Hulo,
Edouard de Castro,
Patrick Masson ,
Ariane Toussaint,
David Osumi-Sutherland,
Andrea Auchincloss,
Sylvain Poux,
Lydie Bougueleret,
Ioannis Xenarios ,
Philippe Le Mercier
,
Ariane Toussaint,
David Osumi-Sutherland,
Andrea Auchincloss,
Sylvain Poux,
Lydie Bougueleret,
Ioannis Xenarios ,
Philippe Le Mercier
Bacterial Virus Ontology; Coordinating across Databases
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Céline Cruciani-Guglielmacci ,
Lara Bellini,
Jessica Denom,
Masaya Oshima,
Neïké Fernandez ,
Priscilla Normandie-Levi,
Xavier P. Berney,
Nadim Kassis,
Claude Rouch,
Julien Dairou ,
Tracy Gorman,
David M. Smith,
Anna Marley,
Robin Liechti ,
Dmitry Kuznetsov
and 16 other authors
Download from doi.org
,
Lara Bellini,
Jessica Denom,
Masaya Oshima,
Neïké Fernandez ,
Priscilla Normandie-Levi,
Xavier P. Berney,
Nadim Kassis,
Claude Rouch,
Julien Dairou ,
Tracy Gorman,
David M. Smith,
Anna Marley,
Robin Liechti ,
Dmitry Kuznetsov
and 16 other authors
Download from doi.org
2016
Robin Liechti ,
Nancy George,
Sara El-Gebali ,
Lou Götz,
Anastasia Chasapi,
Isaac Crespo,
Ioannis Xenarios ,
Thomas Lemberger
,
Nancy George,
Sara El-Gebali ,
Lou Götz,
Anastasia Chasapi,
Isaac Crespo,
Ioannis Xenarios ,
Thomas Lemberger
SourceData - a semantic platform for curating and searching figures
Download from www.nature.com
Adrian M. Altenhoff,
Alan Sousa da Silva,
Christian von Mering ,
Damian Szklarczyk,
Clément-Marie Train,
C. Von Mering,
Kimmen Sjölander,
Ioannis Xenarios ,
Paul D. Thomas,
Erik Sonnhammer,
Altenhoff Am,
Brigitte Boeckmann,
Daniel A. Dalquen,
Salvador Capella-Gutiérrez ,
Dalquen Da
and 21 other authors
,
Damian Szklarczyk,
Clément-Marie Train,
C. Von Mering,
Kimmen Sjölander,
Ioannis Xenarios ,
Paul D. Thomas,
Erik Sonnhammer,
Altenhoff Am,
Brigitte Boeckmann,
Daniel A. Dalquen,
Salvador Capella-Gutiérrez ,
Dalquen Da
and 21 other authors
Standardized benchmarking in the quest for orthologs
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2014
Heinz Stockinger,
Christian von Mering,
Erik van Nimwegen,
Adrian M. Altenhoff,
Konstantin Arnold,
Amos Bairoch,
Frederic Bastian,
Sven Bergmann,
Lydie Bougueleret,
Philipp Bucher,
Mauro Delorenzi,
Lydie Lane,
Philippe Le Mercier ,
Frédérique Lisacek,
Olivier Michielin
and 11 other authors
,
Frédérique Lisacek,
Olivier Michielin
and 11 other authors
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support
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Samir Ounzain,
Rudi Micheletti,
Tal Beckmann,
Blanche Schroen,
Michael Alexanian,
Iole Pezzuto,
Stefania Crippa,
Mohamed Nemir,
Alexandre Sarre,
Rory Johnson,
Jérôme Dauvillier,
Frédéric Burdet,
Mark Ibberson,
Roderic Guigó,
Ioannis Xenarios
and 2 other authors
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and 2 other authors
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Maria Marti-Solano,
Ewan Birney ,
Antoine Bril,
Oscar Della Pasqua,
Hiroaki Kitano,
Barend Mons ,
Ioannis Xenarios ,
Ferran Sanz
,
Antoine Bril,
Oscar Della Pasqua,
Hiroaki Kitano,
Barend Mons ,
Ioannis Xenarios ,
Ferran Sanz
Integrative knowledge management to enhance pharmaceutical R&D
Download from www.nature.com
Ali Abdullah Alfaiz,
Lucia Micale,
Barbara Mandriani,
Bartolomeo Augello,
Maria Teresa Pellico,
Jacqueline Chrast,
Ioannis Xenarios ,
Leopoldo Zelante,
Giuseppe Merla,
Alexandre Reymond
Download from www.researchgate.net
,
Leopoldo Zelante,
Giuseppe Merla,
Alexandre Reymond
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Filip Claes,
Dmitry Kuznetsov ,
Robin Liechti,
Sophie Von Dobschuetz,
Bao Dinh Truong,
Bao Dinh Truong,
Anne Gleizes,
Daniele Conversa,
Alessandro Colonna,
Ettore Demaio,
Sabina Ramazzotto,
Fairouz Larfaoui,
Julio Pinto,
Philippe Le Mercier ,
Philippe Le Mercier
and 2 other authors
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,
Robin Liechti,
Sophie Von Dobschuetz,
Bao Dinh Truong,
Bao Dinh Truong,
Anne Gleizes,
Daniele Conversa,
Alessandro Colonna,
Ettore Demaio,
Sabina Ramazzotto,
Fairouz Larfaoui,
Julio Pinto,
Philippe Le Mercier ,
Philippe Le Mercier
and 2 other authors
Download from doi.org
Juan A. Vizcaíno ,
Eric W. Deutsch ,
Rui Wang,
Attila Csordas,
Florian Reisinger,
Daniel Rios,
Zhi Sun,
Juan Pablo Albar,
José A. Dianes,
Terry Farrah,
Nuno Bandeira,
Pierre-Alain Binz ,
Ioannis Xenarios ,
Martin Eisenacher,
Gerhard Mayer
and 11 other authors
,
Eric W. Deutsch ,
Rui Wang,
Attila Csordas,
Florian Reisinger,
Daniel Rios,
Zhi Sun,
Juan Pablo Albar,
José A. Dianes,
Terry Farrah,
Nuno Bandeira,
Pierre-Alain Binz ,
Ioannis Xenarios ,
Martin Eisenacher,
Gerhard Mayer
and 11 other authors
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Download from www.nature.com
Martial Sankar,
Kaisa Nieminen ,
Laura Ragni,
Ioannis Xenarios ,
Christian S. Hardtke
Download from cdn.elifesciences.org
,
Laura Ragni,
Ioannis Xenarios ,
Christian S. Hardtke
Download from cdn.elifesciences.org
2013
Nicola Bonzanni,
K. Anton Feenstra,
Abhishek Garg,
K. Anton Feenstra ,
Judith Schütte,
Sarah Kinston,
Diego Miranda-Saavedra,
Jaap Heringa,
Ioannis Xenarios ,
Berthold Göttgens
,
Judith Schütte,
Sarah Kinston,
Diego Miranda-Saavedra,
Jaap Heringa,
Ioannis Xenarios ,
Berthold Göttgens
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model
Download from www.ncbi.nlm.nih.gov
Mark Ibberson,
Sylvian Bron,
Nicolas Guex ,
Eveline Faes-Van't Hull,
Assia Ifticene-Treboux,
Luc Henry ,
Ha-A. Lehr,
Jf-F. Delaloye,
George Coukos,
Ioannis Xenarios ,
Marie-Agnès Doucey
Download from clincancerres.aacrjournals.org
,
Eveline Faes-Van't Hull,
Assia Ifticene-Treboux,
Luc Henry ,
Ha-A. Lehr,
Jf-F. Delaloye,
George Coukos,
Ioannis Xenarios ,
Marie-Agnès Doucey
Download from clincancerres.aacrjournals.org
Marco Pagni,
Hélène Niculita-Hirzel,
Loïc Pellissier,
Anne Dubuis,
Ioannis Xenarios ,
Antoine Guisan,
Ian R. Sanders,
Jérôme Goudet,
Nicolas Guex
,
Antoine Guisan,
Ian R. Sanders,
Jérôme Goudet,
Nicolas Guex
Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1
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