All papers authored by Ivan Kulakovskiy
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Andrey Buyan,
Jessica Severin,
Masaru Koido ,
Tanvir Alam ,
Imad Abugessaisa,
Howard Y. Chang,
Josée Dostie,
Masayoshi Itoh ,
Juha Kere ,
Naoto Kondo,
Yunjing Li,
Vsevolod J. Makeev ,
Mickaël Mendez ,
Yasushi Okazaki
and 14 other authors
Annotation of nuclear lncRNAs based on chromatin interactions
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Vitaly V. Gursky ,
Ivan V. Kulakovskiy ,
Maria G. Samsonova
Sequence-based model of gap gene regulatory network
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Victor Levitsky,
Dmitry Oshchepkov,
Leonid Bryzgalov,
Ilya Vorontsov,
Vsevolod Makeev
From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites
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L. P. Ovchinnikov,
A. A. Stavrovskaya
Effects of extracellular YB-1 protein on cultured cells of human breast cancer
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,
D. Lvovs,
N. Oparina,
Makeev
Distribution of tandem repeats in human genome
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,
Vsevolod J. Makeev
Jaccard index based similarity measure to compare transcription factor binding site models
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Yulia A. Medvedeva,
Ulf Schaefer,
Artem S. Kasianov,
Ilya E. Vorontsov,
Vladimir B. Bajic,
Vsevolod J. Makeev
HOCOMOCO: A comprehensive collection of human transcription factor binding sites models
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Maya Ridinger-Saison,
Pauline Rimmelé,
Isabelle Gallais,
Ivan Kulakovskiy ,
Benjamin Levavasseur,
Patricia Legoix-Né,
Caroline Paccard,
François Morle,
Alain Nicolas,
Emmanuel Barillot,
Philippe Hupé ,
Françoise Moreau-Gachelin,
Christel Guillouf
Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia
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Belostotsky Aa,
A. A. Belostotsky,
Artem S. Kasianov,
Natalia G. Esipova,
Yulia A. Medvedeva,
Irina A. Eliseeva,
Eliseeva Ia,
Vsevolod J. Makeev
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Valentina A. Boeva ,
Alexander V. Favorov,
Vsevolod J. Makeev
Deep and wide digging for binding motifs in ChIP-Seq data.
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Andreas Heinzel,
Vsevolod J. Makeev
Intergenic, gene terminal, and intragenic CpG islands in the human genome
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,
Alexander V. Favorov,
Vsevolod J. Makeev
Motif discovery and motif finding from genome-mapped DNase footprint data
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