All papers authored by Ashlee Earl
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2023
Katherine M. Kennedy 
,
Marcus C. de Goffau ,
Maria Elisa Perez-Muñoz ,
Marie-Claire Arrieta ,
Fredrik Bäckhed,
Peer Bork ,
Thorsten Braun ,
Frederic D. Bushman ,
Joel Dore ,
Willem M. de Vos,
Ashlee M. Earl ,
Jonathan A. Eisen ,
Michal A. Elovitz ,
Stephanie C. Ganal-Vonarburg ,
Michael G. Gänzle
and 31 other authors
,
Marcus C. de Goffau ,
Maria Elisa Perez-Muñoz ,
Marie-Claire Arrieta ,
Fredrik Bäckhed,
Peer Bork ,
Thorsten Braun ,
Frederic D. Bushman ,
Joel Dore ,
Willem M. de Vos,
Ashlee M. Earl ,
Jonathan A. Eisen ,
Michal A. Elovitz ,
Stephanie C. Ganal-Vonarburg ,
Michael G. Gänzle
and 31 other authors
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
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2022
Colin J. Worby ,
Henry L. Schreiber,
Timothy J. Straub ,
Lucas R. van Dijk ,
Ryan A. Bronson,
Benjamin S. Olson ,
Jerome S. Pinkner,
Chloe L. P. Obernuefemann,
Vanessa L. Muñoz,
Alexandra E. Paharik,
Philippe N. Azimzadeh,
Bruce J. Walker,
Christopher A. Desjardins,
Wen-Chi Chou,
Karla Bergeron
and 10 other authors
Download from www.nature.com
,
Henry L. Schreiber,
Timothy J. Straub ,
Lucas R. van Dijk ,
Ryan A. Bronson,
Benjamin S. Olson ,
Jerome S. Pinkner,
Chloe L. P. Obernuefemann,
Vanessa L. Muñoz,
Alexandra E. Paharik,
Philippe N. Azimzadeh,
Bruce J. Walker,
Christopher A. Desjardins,
Wen-Chi Chou,
Karla Bergeron
and 10 other authors
Download from www.nature.com
Maya L. Nadimpalli,
Val F. Lanza,
Maria Camila Montealegre ,
Sonia Sultana ,
Erica R. Fuhrmeister,
Colin J. Worby ,
Lisa Teichmann,
Lea Caduff,
Jenna M. Swarthout ,
Yoshika S. Crider ,
Ashlee M. Earl ,
Joe Brown,
Stephen P. Luby ,
Mohammad Aminul Islam ,
Timothy R. Julian
and 1 other authors
Download from www.nature.com
,
Sonia Sultana ,
Erica R. Fuhrmeister,
Colin J. Worby ,
Lisa Teichmann,
Lea Caduff,
Jenna M. Swarthout ,
Yoshika S. Crider ,
Ashlee M. Earl ,
Joe Brown,
Stephen P. Luby ,
Mohammad Aminul Islam ,
Timothy R. Julian
and 1 other authors
Download from www.nature.com
2020
Gregory P. Donaldson ,
Wen-Chi Chou,
Abigail L. Manson ,
Peter Rogov,
Thomas Abeel,
James Bochicchio,
Dawn Ciulla,
Alexandre Melnikov,
Peter B. Ernst,
Hiutung Chu,
Georgia Giannoukos,
Ashlee M. Earl ,
Sarkis K. Mazmanian
,
Wen-Chi Chou,
Abigail L. Manson ,
Peter Rogov,
Thomas Abeel,
James Bochicchio,
Dawn Ciulla,
Alexandre Melnikov,
Peter B. Ernst,
Hiutung Chu,
Georgia Giannoukos,
Ashlee M. Earl ,
Sarkis K. Mazmanian
Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice
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2016
Jawad Abed,
Johanna E. M. Emgård,
Gideon Zamir,
Mouhammad Faroja,
Gideon Almogy,
Amalie Grenov,
Asaf Sol,
Ronit Naor,
Eli Pikarsky,
Karine A. Atlan,
Anna Mellul,
Stella Chaushu,
Abigail L. Manson,
Ashlee M. Earl ,
Nora Ou
and 3 other authors
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,
Nora Ou
and 3 other authors
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Christopher A. Desjardins,
Keira A. Cohen,
Vanisha Munsamy,
Thomas Abeel ,
Kashmeel Maharaj,
Bruce J. Walker,
Terrance P. Shea,
Deepak V. Almeida,
Abigail L. Manson,
Alex Salazar,
Nesri Padayatchi,
Max R. O'Donnell,
Koleka P. Mlisana,
Jennifer Wortman ,
Bruce W. Birren
and 3 other authors
Download from www.nature.com
,
Kashmeel Maharaj,
Bruce J. Walker,
Terrance P. Shea,
Deepak V. Almeida,
Abigail L. Manson,
Alex Salazar,
Nesri Padayatchi,
Max R. O'Donnell,
Koleka P. Mlisana,
Jennifer Wortman ,
Bruce W. Birren
and 3 other authors
Download from www.nature.com
Lesibana A. Malinga,
Thomas Abeel,
Christopher A. Desjardins,
Talent C. Dlamini,
Gail Cassell,
Sinéad B. Chapman,
Bruce W. Birren,
Ashlee M. Earl ,
Martie van der Walt
Download from dx.doi.org
,
Martie van der Walt
Download from dx.doi.org
Kathryn Winglee ,
Abigail Manson McGuire,
Mamoudou Maiga,
Thomas Abeel,
Terrance Shea,
Christopher A. Desjardins,
Bassirou Diarra,
Bocar Baya,
Moumine Sanogo,
Souleymane Diallo,
Ashlee M. Earl ,
William R. Bishai
Download from doi.org
,
Abigail Manson McGuire,
Mamoudou Maiga,
Thomas Abeel,
Terrance Shea,
Christopher A. Desjardins,
Bassirou Diarra,
Bocar Baya,
Moumine Sanogo,
Souleymane Diallo,
Ashlee M. Earl ,
William R. Bishai
Download from doi.org
Mamoudou Maiga,
Geetha Srikrishna,
Sophia Siddiqui,
Moumine Sanogo,
Anou M. Somboro,
Varun Mazumdar,
Christian Yoder,
Susan Orsega,
Hamadoun Kassambara,
Drissa Goita,
Robert L. Murphy,
Michael Polis,
Graham S. Timmins,
Keira Cohen,
Bocar Baya
and 8 other authors
Download from www.ncbi.nlm.nih.gov
2015
Kyla Cochrane,
Abigail Manson McGuire,
Margaret E. Priest,
Amr Abouelleil,
Reggie Lo,
Gustavo C. Cerqueira ,
Ashlee M. Earl ,
Emma Allen-Vercoe
Download from europepmc.org
,
Ashlee M. Earl ,
Emma Allen-Vercoe
Download from europepmc.org
Keira A. Cohen,
Thomas Abeel,
Abigail Manson McGuire,
Christopher A. Desjardins,
Vanisha Munsamy,
Terrance P. Shea,
Bruce J. Walker,
Nonkqubela Bantubani,
Deepak V. Almeida,
Lucia Alvarado,
Sinéad B. Chapman,
Nomonde R. Mvelase,
Eamon Y. Duffy,
Michael G. Fitzgerald,
Pamla Govender
and 18 other authors
Download from doi.org
Maria V. Sizova,
Amanda Chilaka,
Ashlee M. Earl ,
Sebastian N. Doerfert,
Paul A. Muller,
Manolito Torralba,
Jamison M. McCorrison,
A. Scott Durkin,
A. Scott Durkin,
Karen E. Nelson,
Slava S. Epstein
Download from link.springer.com
,
Sebastian N. Doerfert,
Paul A. Muller,
Manolito Torralba,
Jamison M. McCorrison,
A. Scott Durkin,
A. Scott Durkin,
Karen E. Nelson,
Slava S. Epstein
Download from link.springer.com
O. Martin Williams,
O. Martin Williams,
Thomas Abeel ,
Nicola Casali,
Keira Cohen,
Alex S. Pym,
Sarah B. Mungall,
Christopher A. Desjardins,
Anindo Banerjee,
Francis Drobniewski,
Ashlee M. Earl ,
Graham S. Cooke
,
Nicola Casali,
Keira Cohen,
Alex S. Pym,
Sarah B. Mungall,
Christopher A. Desjardins,
Anindo Banerjee,
Francis Drobniewski,
Ashlee M. Earl ,
Graham S. Cooke
Fatal Nosocomial MDR TB Identified through Routine Genetic Analysis and Whole-Genome Sequencing
Download from dx.doi.org
Alex Salazar,
Christopher Desjardins,
Ashlee Earl ,
Thomas Abeel
,
Thomas Abeel
Normalizing alternate representations of large sequence variants across multiple bacterial genomes
Download from link.springer.com
2014
Bruce J. Walker,
Thomas Abeel ,
Terrance Shea,
Margaret Priest,
Amr Abouelliel,
Sharadha Sakthikumar,
Christina A. Cuomo ,
Qiandong Zeng,
Jennifer Wortman,
Sarah K. Young,
Ashlee M. Earl
Download from doi.org
,
Terrance Shea,
Margaret Priest,
Amr Abouelliel,
Sharadha Sakthikumar,
Christina A. Cuomo ,
Qiandong Zeng,
Jennifer Wortman,
Sarah K. Young,
Ashlee M. Earl
Download from doi.org
Michael D. Valentino,
Abigail Manson McGuire,
Jason W. Rosch,
Paulo J. M. Bispo,
Corinna Burnham,
Christine M. Sanfilippo,
Robert A. Carter,
Michael E. Zegans,
Bernard Beall,
Ashlee M. Earl ,
Elaine I. Tuomanen,
Timothy W. Morris,
Wolfgang Haas,
Michael S. Gilmore
Download from www.nature.com
,
Elaine I. Tuomanen,
Timothy W. Morris,
Wolfgang Haas,
Michael S. Gilmore
Download from www.nature.com
Abigail Manson McGuire,
Kyla Cochrane,
Allison D. Griggs,
Brian J. Haas,
Thomas Abeel ,
Qiandong Zeng,
Justin B. Nice,
Hanlon MacDonald,
Bruce W. Birren,
Bryan W. Berger ,
Emma Allen-Vercoe,
Ashlee M. Earl
,
Qiandong Zeng,
Justin B. Nice,
Hanlon MacDonald,
Bruce W. Birren,
Bryan W. Berger ,
Emma Allen-Vercoe,
Ashlee M. Earl
Evolution of Invasion in a Diverse Set of Fusobacterium Species
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