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All papers authored by Diogo N. Silva

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2020 Catarina Inês Mendes

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, Erley Lizarazo

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, Miguel P. Machado

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, Diogo N. Silva

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, Mário Ramirez

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, Natacha Couto

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, John W. A. Rossen

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, João Andre Carriço

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DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

2019 C. I. Mendes

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, E. Lizarazo, M. P. Machado, D. N. Silva

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, A. Tami, M. Ramirez, N. Couto, J. W. A. Rossen, J. A. Carriço

DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics

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Inês Mendes, Erley Lizarazo, Miguel P. Machado, Diogo N. Silva

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, Adriana Tami, Mario Ramirez, Natacha Couto, John W. A. Rossen, Joao Andre Carrico

DEN-IM: Dengue virus genotyping from shotgun and targeted metagenomics - HTML reports

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Inês Mendes, Erley Lizarazo, Miguel P. Machado, Diogo N. Silva

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, Adriana Tami, Mario Ramirez, Natacha Couto, John W. A. Rossen, Joao Andre Carrico

DEN-IM's reports on shotgun and targeted metagenomics datasets

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2017 Francisco Pina-Martins

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, Diogo N. Silva

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, Joana Fino, Octávio S. Paulo

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Structure_threader : An improved method for automation and parallelization of programs structure , fastStructure and MavericK on multicore CPU systems

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Pedro Talhinhas, Dora Batista

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, Inês Diniz, Ana Vieira, Diogo N. Silva

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, Andreia Loureiro, Sílvia Tavares, Ana Paula Pereira, Helena G. Azinheira, Leonor Guerra‐Guimarães, Vítor Várzea, Maria do Céu Silva

The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics

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Dora Batista

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, Diogo N. Silva

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, Ana Vieira, Ana Cabral, Ana S. Pires, Andreia Loureiro, Leonor Guerra-Guimarães, Ana P. Pereira, Helena Azinheira, Pedro Talhinhas, Maria do Céu Silva, Vitor Várzea

Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology

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2016 Sara E. Silva, Diogo N. Silva

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, Tereza Almeida, CÉsar A. Garcia, OctÁvio S. Paulo

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, Manuela Sim-Sim

Age estimates ofFrullania(Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

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Maria M. Romeiras

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, Ana Vieira, Diogo N. Silva

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, Monica Moura, Arnoldo Santos-Guerra, Dora Batista

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, Maria Cristina Duarte

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, Octávio S. Paulo

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Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny

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2015 Diogo N. Silva

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, Sebastien Duplessis, Pedro Talhinhas, Helena Azinheira, Octávio S. Paulo

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Genomic Patterns of Positive Selection at the Origin of Rust Fungi

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Dora Batista

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, Diogo N. Silva

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Population genomics of Hemileia vastatrix using RAD sequencing

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2014 Ana S. B. Rodrigues, Sara E. Silva, Eduardo Marabuto, Diogo N. Silva

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, Mike R. Wilson, Vinton Thompson, Selçuk Yurtsever, Antti Halkka, Paulo A. V. Borges, José A. Quartau, Octávio S. Paulo

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, Sofia G. Seabra

New Mitochondrial and Nuclear Evidences Support Recent Demographic Expansion and an Atypical Phylogeographic Pattern in the Spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae)

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2012 Ana Vieira, Pedro Talhinhas, Maria Do Ceu Silva, Helena Gil Azinheira, Diana Fernandez, Diogo N. Silva

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, Octavio S. Paulo, Association for Science, Sébastien Duplessis, Dora Batista, Information on Coffee

Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach

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Diogo N. Silva

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, Pedro Talhinhas, Lei Cai, Luzolo Manuel, Elijah K. Gichuru, Andreia Loureiro, Vítor Várzea, Octávio S. Paulo

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ORCID

Host‐jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

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Pedro Talhinhas, Vítor Várzea, Cai Lei, Luzolo Manuel, Elijah K. Gichuru, Diogo N.; Talhinhas Pedro; Lei Cai; Manuel Luzolo; Gichuru Elijah K.; Loureiro Andreia; Várzea Vítor; Paulo Octavio S.; Batista Dora; Silva

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, Andreia Loureiro, Octavio S. Paulo, Dora Batista

Data from: Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

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2011 Diogo Nuno Silva

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, Pedro Talhinhas, Vítor Várzea, Lei Cai, Octávio Salgueiro Paulo

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ORCID

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: An example from coffee (Coffea spp.) Hosts

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L. Guerra Guimarães, P. Talhinhas, A. Vieira, C. Struck, M. C. Silva, V. Várzea, A. Loureiro, L. Gonzalez, A. P. Pereira, Diogo N. Silva

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, O. S. Paulo, Dora Batista

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, H. G. Azinheira

Analysis of Population Genetic Diversity and Differentiation in Hemileia vastatrix by Molecular Markers

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P. Talhinhas, V. Várzea, M. C. Silva, A. Loureiro, Diogo N. Silva

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, O. S. Paulo, D. Batista

Population Structure of Colletotrichum kahawae, the Causal Agent of Coffe Berry Disease (CBD): Insights from a Multi-Locus Approach

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1970 Mirko Rossi, Mickael Silva, Bruno Gonçalves, Diogo N. Silva

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, Miguel P. Machado, Mónica Oleastro, Vítor Borges, Joana Isidro

ORCID

, Luis Viera, Jani Halkilahti, Anniina Jaakkonen, Riikka Katariina Laukkanen-Ninios, Maria Ulrika Kristina Fredriksson-Ahomaa, Saara Salmenlinna, Marjaana Hakkinen and 4 other authors

Innuendo Whole Genome And Core Genome Mlst Schemas And Datasets For Yersinia Enterocolitica

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Mirko Rossi, Mickael Silva, Diogo N. Silva

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, Bruno Gonçalves, Miguel P. Machado, Mónica Oleastro, Vítor Borges, Luis Viera, Joana Isidro

ORCID

, Anniina Jaakkonen, Jani Halkilahti, Federica Palma, Saara Salmenlinna, Marjaana Hakkinen, Javier Garaizar Candina and 3 other authors

Innuendo Whole Genome And Core Genome Mlst Schemas And Datasets For Salmonella Enterica

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