Stefano de Pretis

All papers authored by Stefano de Pretis

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2022 Stefano de Pretis

, Davide Cittaro

Dimensionality reduction and statistical modeling of scGET-seq data

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2021 Zaira Ianniello, Melissa Sorci, Lavinia Ceci Ginistrelli, Alessia Iaiza, Marcella Marchioni, Claudia Tito, Ernestina Capuano, Silvia Masciarelli, Tiziana Ottone, Cristina Attrotto, Manuela Rizzo, Luca Franceschini, Stefano de Pretis

, Maria Teresa Voso, Mattia Pelizzola and 2 other authors

New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia

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Stefano de Pretis

, Mattia Furlan, Mattia Pelizzola

Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma

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2020 Mattia Furlan, Stefano de Pretis

, Mattia Pelizzola

Dynamics of transcriptional and post-transcriptional regulation

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Adriano Biasini

, Stefano de Pretis

, Baroj Abdulkarim, Stefano Pretis, Jennifer Y. Tan

, Rajika Arora, Harry Wischnewski, Rene Dreos, Mattia Pelizzola

, Constance Ciaudo

, Ana Claudia Marques

Translation is required for miRNA‐dependent decay of endogenous transcripts

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Mattia Furlan, Eugenia Galeota, N. Del Gaudio, Nunzio Del Gaudio, Erik Dassi

, Michele Caselle, Stefano de Pretis

, Mattia Pelizzola

Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling

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Stefano de Pretis

, Mattia Furlan, Mattia Pelizzola

INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species

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Mattia Furlan, Iris Tanaka

, Tommaso Leonardi, Stefano de Pretis

, Mattia Pelizzola

Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts

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2019 Alessandra Tesi, Stefano de Pretis

, Stefano Pretis, Mattia Furlan, Marco Filipuzzi, Marco J. Morelli, Adrian Andronache, Mirko Doni, Alessandro Verrecchia, Mattia Pelizzola, Bruno Amati

, Arianna Sabò

An early Myc‐dependent transcriptional program orchestrates cell growth during B‐cell activation

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Mattia Furlan

, Eugenia Galeota, Stefano De Pretis

, Michele Caselle

, Mattia Pelizzola

m6A-Dependent RNA Dynamics in T Cell Differentiation

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A. Tesi, S. de Pretis

, M. Furlan, M. Filipuzzi, M. J. Morelli, A. Andronache, M. Doni, A. Verrecchia, M. Pelizzola, B. Amati, A. Sabò

An early Myc-dependent transcriptional program underlies enhanced macromolecular biosynthesis and cell growth during B-cell activation

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2017 Stefano de Pretis

, Theresia R. Kress, Marco J. Morelli, Arianna Sabò, Chiara Locarno, Alessandro Verrecchia, Mirko Doni, Stefano Campaner, Bruno Amati, Mattia Pelizzola

Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation

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2016 Neelanjan Mukherjee, Lorenzo Calviello

, Antje Hirsekorn, Stefano de Pretis

, Mattia Pelizzola, Uwe Ohler

Integrative classification of human coding and noncoding genes through RNA metabolism profiles

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Giorgio E. M. Melloni, Stefano de Pretis

, Laura Riva, Mattia Pelizzola

, Heiko MĂźller, Arnaud CĂŠol, Arnaud Céol, Luca Zammataro, Jole Costanza, Heiko Müller

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer

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Matteo J. Marzi, Francesco Ghini, Benedetta Cerruti, Stefano de Pretis

, Paola Bonetti

, Chiara Giacomelli, Marcin G. Gorski, Marcin M. Gorski, Theresia Kress, Mattia Pelizzola

, Heiko Muller

, Bruno Amati, Francesco Nicassio

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

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Valerio Bianchi, Arnaud Ceol, Alessandro G. E. Ogier, Stefano de Pretis

, Eugenia Galeota, Kamal Kishore, Pranami Bora, Ottavio Croci, Stefano Campaner, Bruno Amati, Marco J. Morelli, Mattia Pelizzola

Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions.

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2015 Liv M. I. Austenaa, Iros Barozzi, Marta Simonatto, Silvia Masella, Giulia Della Chiara, Serena Ghisletti, Alessia Curina, Elzo de Wit, Britta A. M. Bouwman, Stefano de Pretis

, Viviana Piccolo, Alberto Termanini, Elena Prosperini, Mattia Pelizzola

, Wouter de Laat

and 1 other authors

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination

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Kamal Kishore, Stefano de Pretis

, Ryan Lister, Marco J. Morelli, Valerio Bianchi, Bruno Amati, Joseph R. Ecker, Mattia Pelizzola

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

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Stefano de Pretis

, Theresia Kress, Marco J. Morelli, Giorgio E. M. Melloni, Laura Riva, Bruno Amati, Mattia Pelizzola

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments

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Mattia Pelizzola

, Marco J. Morelli, Arianna Sabò, Theresia R. Kress, Stefano de Pretis

, Bruno Amati

Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data

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All papers authored by Stefano de Pretis