Todd Treangen - Dissemin

All papers authored by Todd Treangen

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2024 Chin-Ting Wu, William C. Shropshire, Micah M. Bhatti, Sherry Cantu, Israel K. Glover, Selvalakshmi Selvaraj Anand, Xiaojun Liu, Awdhesh Kalia, Todd J. Treangen

, Roy F. Chemaly, Amy Spallone, Samuel Shelburne

Rapid Whole Genome Characterization of High-Risk Pathogens Using Long-Read Sequencing to Identify Potential Healthcare Transmission

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This paper is made freely available by the publisher.

Ali Azizpour, Advait Balaji, Todd J. Treangen

, Santiago Segarra

Graph-based self-supervised learning for repeat detection in metagenomic assembly

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Yilei Fu

, Sergey Aganezov, Medhat Mahmoud

, John Beaulaurier

, Sissel Juul

, Todd J. Treangen

, Fritz J. Sedlazeck

MethPhaser: methylation-based long-read haplotype phasing of human genomes

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Hannah Flinn, Austin Marshall, Morgan Holcomb, Leonardo Cruz, Sirena Soriano, Todd J. Treangen

, Sonia Villapol

Antibiotic treatment induces microbiome dysbiosis and reduction of neuroinflammation following traumatic brain injury in mice

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Bryce Kille

, Michael G. Nute, Victor Huang, Eddie Kim, Adam M. Phillippy

, Todd J. Treangen

Parsnp 2.0: scalable core-genome alignment for massive microbial datasets

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Daniel P. Agustinho

, Yilei Fu

, Vipin K. Menon

, Ginger A. Metcalf, Todd J. Treangen

, Fritz J. Sedlazeck

Unveiling microbial diversity: harnessing long-read sequencing technology

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Morgan Holcomb, Austin Marshall, Hannah Flinn, Mariana Lozano, Sirena Soriano, Fernando Gomez-Pinilla, Todd J. Treangen

, Sonia Villapol

Probiotic treatment causes sex-specific neuroprotection after traumatic brain injury in mice

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Selvalakshmi Selvaraj Anand, Chin-Ting Wu, Jordan Bremer, Micah Bhatti

, Todd J. Treangen

, Awdhesh Kalia

, Samuel A. Shelburne

, William C. Shropshire

Identification of a novel CG307 sub-clade in third-generation-cephalosporin-resistant Klebsiella pneumoniae causing invasive infections in the USA

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Kristen D. Curry, Feiqiao Brian Yu, Summer E. Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P. C. Rocha, Todd J. Treangen

Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs

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Qinglong Wu, Shyam Badu, Sik Yu So, Todd J. Treangen

, Tor C. Savidge

The pan-microbiome profiling system Taxa4Meta identifies clinical dysbiotic features and classifies diarrheal disease

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2023 Felix Quintana

, Todd Treangen

, Lydia Kavraki

Leveraging Large Language Models for Predicting Microbial Virulence from Protein Structure and Sequence

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Advait Balaji

, Yunxi Liu

, Michael G. Nute

, Bingbing Hu

, Anthony D. Kappell

, Danielle S. Lesassier

, Gene D. Godbold

, Krista Ternus

, Todd Treangen

SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens

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Todd J. Treangen

, Moshe Y. Vardi

The long game of tenure

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Bryce Kille

, Erik Garrison

, Todd J. Treangen

, Adam M. Phillippy

Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation

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Yunxi Liu

, Nicolae Sapoval

, Pilar Gallego-García

, Laura Tomás

, David Posada

, Todd J. Treangen

, Lauren B. Stadler

Crykey: Rapid Identification of SARS-CoV-2 Cryptic Mutations in Wastewater

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Qi Wang, Michael Nute, Todd J. Treangen

Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communities

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Nicolae Sapoval

, Yunxi Liu, Esther G. Lou, Loren Hopkins

, Katherine B. Ensor, Rebecca Schneider, Lauren B. Stadler, Todd J. Treangen

Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater

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Yilei Fu, Sergey Aganezov, Medhat Mahmoud

, John Beaulaurier, Sissel Juul, Todd J. Treangen

, Fritz J. Sedlazeck

MethPhaser: methylation-based haplotype phasing of human genomes

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Camille McCall, Ryan A. Leo Elworth, Kristine M. Wylie, Todd N. Wylie, Katherine Dyson, Ryan Doughty, Todd Treangen

, Loren Hopkins, Katherine B. Ensor, Lauren B. Stadler

Targeted metagenomic sequencing for detection of vertebrate viruses in wastewater for public health surveillance

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Advait Balaji, Yunxi Liu, Michael G. Nute, Bingbing Hu, Anthony Kappell, Danielle S. LeSassier, Gene D. Godbold

, Krista L. Ternus, Todd J. Treangen

SeqScreen-Nano: a computational platform for rapid, in-field characterization of previously unseen pathogens

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All papers authored by Todd Treangen