Chih-Yu Chen - Dissemin

All papers authored by Chih-Yu Chen

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2023 Jason R. Grant, Eric Enns, Eric Marinier, Arnab Mandal, Emily K. Herman, Chih-Yu Chen

, Morag Graham, Gary Van Domselaar

, Paul Stothard

Proksee: in-depth characterization and visualization of bacterial genomes

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John Merluza, Johnny Ung, Kai Makowski, Alyssia Robinson, Kathy Manguiat, Nicole Mueller, Jonathan Audet, Julie Chih-Yu Chen

, James E. Strong

, Heidi Wood, Alexander Bello

Validation and Establishment of the SARS-CoV-2 Lentivirus Surrogate Neutralization Assay as a Prescreening Tool for the Plaque Reduction Neutralization Test

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2022 Kerry Dust

, Michael Carpenter, Julie Chih-Yu Chen

, Chris Grant, Stuart McCorrister, Garret R. Westmacott, Alberto Severini

Human Papillomavirus 16 E6 and E7 Oncoproteins Alter the Abundance of Proteins Associated with DNA Damage Response, Immune Signaling and Epidermal Differentiation

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Christy-Lynn Peterson

, David Alexander, Julie Chih-Yu Chen

, Heather Adam, Matthew Walker, Jennifer Ali, Jessica Forbes, Eduardo Taboada, Dillon O. R. Barker, Morag Graham, Natalie Knox, Aleisha R. Reimer

Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool

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2021 Chunfu Yang, Lei Lei, John W. Marshall Collins, Michael Briones, Li Ma, Gail L. Sturdevant, Hua Su, Anuj K. Kashyap, David Dorward, Kevin W. Bock

, Ian N. Moore, Christine Bonner, Chih-Yu Chen

, Craig A. Martens, Stacy Ricklefs and 5 other authors

Chlamydia evasion of neutrophil host defense results in NLRP3 dependent myeloid-mediated sterile inflammation through the purinergic P2X7 receptor

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This paper was not found in any repository, but could be made available legally by the author.

2020 Emelissa J. Valcourt, Kathy Manguiat, Alyssia Robinson, Julie Chih-Yu Chen

, Kristina Dimitrova, Clark Philipson, Lise Lamoureux, Elizabeth McLachlan

, Zachary Schiffman

, Michael A. Drebot, Heidi Wood

Evaluation of a commercially-available surrogate virus neutralization test for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)

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Julie Chih-Yu Chen

, Andrea D. Tyler

Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data

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Chih‐yu Chen

, Clifford G. Clark, Stacie Langner, David A. Boyd, Amrita Bharat, Stuart J. McCorrister, Andrew G. McArthur

, Morag R. Graham, Garrett R. Westmacott, Gary Van Domselaar

Detection of Antimicrobial Resistance Using Proteomics and the Comprehensive Antibiotic Resistance Database: A Case Study

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2018 Jessica D. Forbes, Chih-Yu Chen

, Natalie C. Knox, Ruth-Ann Marrie, Hani El-Gabalawy

, Teresa de Kievit, Michelle Alfa, Charles N. Bernstein, Gary Van Domselaar

A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?

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Michael John Patton, Chih-Yu Chen

, Chunfu Yang, Stuart McCorrister, Chris Grant, Garrett Westmacott, Xin-Yong Yuan, Estela Ochoa, Robert Fariss, William M. Whitmire, John H. Carlson, Harlan D. Caldwell, Grant McClarty

Plasmid Negative Regulation of CPAF Expression Is Pgp4 Independent and Restricted to InvasiveChlamydia trachomatisBiovars

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Clifford G. Clark

, Chih-Yu Chen

, Chrystal Berry, Matthew Walker, Stuart J. McCorrister, Patrick M. Chong, Garrett R. Westmacott

Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds

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2016 Jack W. Hickmott, Chih-Yu Chen

, David J. Arenillas, Andrea J. Korecki, Siu Ling Lam, Laurie L. Molday, Russell J. Bonaguro, Michelle Zhou, Alice Y. Chou, Anthony Mathelier, Sanford L. Boye, William W. Hauswirth, Robert S. Molday, Wyeth W. Wasserman, Elizabeth M. Simpson

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina

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2015 Anthony Mathelier, Oriol Fornes, David J. Arenillas, Chih-Yu Chen

, Grégoire Denay, Jessica Lee, Wenqiang Shi, Casper Shyr, Ge Tan, Rebecca Worsley-Hunt, Allen W. Zhang, François Parcy

, Boris Lenhard

, Albin Sandelin, Wyeth W. Wasserman

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

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This paper is available in a repository.

Yifeng Li, Chih-Yu Chen

, Alice M. Kaye, Wyeth W. Wasserman

The Identification of cis-Regulatory Elements: A Review from a Machine Learning Perspective

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Yifeng Li, Chih-Yu Chen

, Chen Cy, Wasserman Ww, Wyeth W. Wasserman

Deep feature selection: Theory and application to identify enhancers and promoters

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2014 Chih-Yu Chen

, I. Shou Chang, I.-Shou Chang, Chao A. Hsiung, Wyeth W. Wasserman, Cy;Chang IS;Hsiung CA;Wasserman WW Chen

On the identification of potential regulatory variants within genome wide association candidate SNP sets

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2013 Anthony Mathelier, Xiaobei Zhao, Allen W. Zhang, François Parcy

, Rebecca Worsley-Hunt, David J. Arenillas, Sorana Buchman, Chih-Yu Chen

, Alice Chou, Hans Ienasescu, Jonathan Lim, Casper Shyr, Ge Tan, Michelle Zhou, Boris Lenhard

and 2 other authors

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

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Allison M. Cotton, Chih-Yu Chen

, Lucia L. Lam, Wyeth W. Wasserman, Michael S. Kobor, Carolyn J. Brown

Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains

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2012 Anandi Bhattacharya, Chih-Yu Chen

, Chen Cy, Sara Ho, Jennifer A. Mitchell, Mitchell Ja

Upstream Distal Regulatory Elements Contact the Lmo2 Promoter in Mouse Erythroid Cells

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Mitchell Ja, Jennifer A. Mitchell, Ieuan Clay

, David Umlauf, Chih-Yu Chen

, Chen Cy, Moir Ca, Catherine A. Moir, Eskiw Ch, Christopher H. Eskiw, Stefan Schoenfelder, Lyubomira Chakalova, Takashi Nagano, Peter Fraser

Nuclear RNA Sequencing of the Mouse Erythroid Cell Transcriptome

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All papers authored by Chih-Yu Chen