Dmitry Ravcheev - Dissemin

All papers authored by Dmitry Ravcheev

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2019 Dmitry A. Ravcheev

, Lubin Moussu, Semra Smajic, Ines Thiele

Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome

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Almut Heinken, Dmitry A. Ravcheev

, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

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2018 Alise Zagare, Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German Preciat Gonzalez, German Preciat, Anna Drofn Danielsdottir, Almut Heinken, Laurent Heirendt, Luca Wiltgen, Alise Žagare, Max Krecke, Stefania Magnusdottir and 20 other authors

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

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2017 Dmitry A. Ravcheev

, Ines Thiele

Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of Mucin-Derived Monosaccharides

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2016 Stefania Magnusdottir, Almut Katrin Heinken, Laura Kutt, Dmitry A. Ravcheev

, Eugen Bauer, Alberto Noronha, Kacy Greenhalgh, Christian Jäger, Joanna Baginska, Paul Wilmes, Ronan Mt T. Fleming

, Ines Thiele

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

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Almut Heinken, Dmitry A. Ravcheev

, Ines Thiele

Systems biology of bacteria-host interactions

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Olga V. Tsoy, Dmitry A. Ravcheev

, Jelena Čuklina, Mikhail S. Gelfand

Nitrogen fixation and molecular oxygen: comparative genomic reconstruction of transcription regulation in Alphaproteobacteria

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Dmitry A. Ravcheev

, Ines Thiele

Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis

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2015 Huimin Zhang, Dmitry A. Ravcheev

, Dan Hu, Fengyu Zhang, Xiufang Gong, Lina Hao, Min Cao, Dmitry A. Rodionov, Changjun Wang, Youjun Feng

Two novel regulators of N-acetyl-galactosamine utilization pathway and distinct roles in bacterial infections

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Youjun Feng, Ritesh Kumar, Dmitry A. Ravcheev

, Huimin Zhang

Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism

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Stefanía Magnúsdóttir, Dmitry Ravcheev

, Valérie de Crécy-Lagard, Ines Thiele

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

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2014 Dmitry A. Ravcheev

, Ines Thiele

Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota

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Lei Zhang, Xiaoqun Nie, Dmitry A. Ravcheev

, Dmitry A. Rodionov, Jia Sheng, Yang Gu, Sheng Yang, Weihong Jiang, Chen Yang

Redox-Responsive Repressor Rex Modulates Alcohol Production and Oxidative Stress Tolerance in Clostridium acetobutylicum

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Dmitry A. Ravcheev

, Matvei S. Khoroshkin, Olga N. Laikova, Olga V. Tsoy, Natalia V. Sernova, Svetlana A. Petrova, Aleksandra B. Rakhmaninova, Pavel S. Novichkov, Mikhail S. Gelfand, Dmitry A. Rodionov

Comparative genomics and evolution of regulons of the LacI-family transcription factors

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2013 Dmitry A. Ravcheev

, Adam Godzik, Andrei L. Osterman, Dmitry A. Rodionov

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

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Dmitry A. Ravcheev

, Aaron A. Best, Natalia V. Sernova, Marat D. Kazanov, Pavel S. Novichkov, Dmitry A. Rodionov

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

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Dmitry A. Rodionov

, Irina A. Rodionova, Xiaoqing Li, Dmitry A. Ravcheev

, Yekaterina Tarasova, Vasiliy A. Portnoy, Karsten Zengler

, Andrei L. Osterman

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

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Pavel S. Novichkov, Alexey E. Kazakov, Dmitry A. Ravcheev

, Semen A. Leyn, Galina Y. Kovaleva, Roman A. Sutormin, Marat D. Kazanov, William Riehl, Adam P. Arkin, Inna Dubchak, Dmitry A. Rodionov

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

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2012 I. A. Suvorova, D. A. Ravcheev

, M. S. Gelfand

Regulation and Evolution of Malonate and Propionate Catabolism in Proteobacteria

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Olga Pavlova, Daria Lavysh, Evgeny Klimuk, Marko Djordjevic, Ravcheev Da, Dmitry A. Ravcheev

, Mikhail S. Gelfand, Gelfand Ms, Konstantin Severinov, Natalja Akulenko

Temporal Regulation of Gene Expression of the Escherichia coli Bacteriophage phiEco32

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All papers authored by Dmitry Ravcheev