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F1000Research, F1000Research, (4), p. 105, 2016

DOI: 10.12688/f1000research.6379.2

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regionReport: Interactive reports for region-level and feature-level genomic analyses

Journal article published in 2016 by Leonardo Collado-Torres ORCID, Andrew E. Jaffe ORCID, Jeffrey T. Leek
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Postprint: archiving forbidden
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Data provided by SHERPA/RoMEO

Abstract

regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibility information. regionReport provides specialised reports for exploring DESeq2, edgeR, or derfinder differential expression analyses results. regionReport is also flexible and can easily be expanded with report templates for other analysis pipelines.