Dissemin is shutting down on January 1st, 2025

Published in

Elsevier, Methods, (72), p. 9-15, 2015

DOI: 10.1016/j.ymeth.2014.08.009

Links

Tools

Export citation

Search in Google Scholar

oxBS-450K: A method for analysing hydroxymethylation using 450K BeadChips

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

Full text: Download

Green circle
Preprint: archiving allowed
Orange circle
Postprint: archiving restricted
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

DNA methylation analysis has become an integral part of biomedical research. For high-throughput applications such as epigenome-wide association studies, the Infinium HumanMethylation450 (450K) BeadChip is currently the platform of choice. However, BeadChip processing relies on traditional bisulfite (BS) based protocols which cannot discriminate between 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC). Here, we report the adaptation of the recently developed oxidative bisulfite (oxBS) chemistry to specifically detect both 5mC and 5hmC in a single workflow using 450K BeadChips, termed oxBS-450K. Supported by validation using mass spectrometry and pyrosequencing, we demonstrate reproducible (R(2) > 0.99) detection of 5hmC in human brain tissue using the optimised oxBS-450K protocol described here.