Published in

Elsevier, Journal of Proteomics, (95), p. 89-92, 2013

DOI: 10.1016/j.jprot.2013.04.011

Links

Tools

Export citation

Search in Google Scholar

Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆

Journal article published in 2013 by Niels Hulstaert, Florian Reisinger, Jonathan Rameseder, Harald Barsnes, Juan Antonio Vizcaíno ORCID, Lennart Martens ORCID
This paper is available in a repository.
This paper is available in a repository.

Full text: Download

Green circle
Preprint: archiving allowed
Upload
Orange circle
Postprint: archiving restricted
Upload
Red circle
Published version: archiving forbidden
Policy details
Data provided by SHERPA/RoMEO

Abstract

We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics.