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Oxford University Press, Bioinformatics, 3(33), p. 453-455, 2016

DOI: 10.1093/bioinformatics/btw636

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Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms

Journal article published in 2016 by Luca Bianco ORCID, Samantha Riccadonna, Enrico Lavezzo, Marco Falda, Elide Formentin, Duccio Cavalieri, Stefano Toppo ORCID, Paolo Fontana
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Abstract Summary Pathway Inspector is an easy-to-use web application helping researchers to find patterns of expression in complex RNAseq experiments. The tool combines two standard approaches for RNAseq analysis: the identification of differentially expressed genes and a topology-based analysis of enriched pathways. Pathway Inspector is equipped with ad hoc interactive graphical interfaces simplifying the discovery of modulated pathways and the integration of the differentially expressed genes in the corresponding pathway topology. Availability and Implementation Pathway Inspector is available at the website http://admiral.fmach.it/PI and has been developed in Python, making use of the Django Web Framework.