This paper describes two datasets on the molluscan fauna from the Mediterranean infralittoral reef ecosystem - the biocoenosis of photophilic algae. The first dataset is taken from the East Mediterranean node of the NAGISA project. The second one is a compilation based on the available published material in peer - reviewed journals as well as from the accessible grey literature. These datasets cover a time period of 43 years from 1969 to 2012 from several locations spanning the Mediterranean Sea. This dataset is the only one available from this important Mediterranean Habitat, coded as 1170 in the Habitats Directive (92/43/EEC) and can provide valuable information on the needs of ecosystems functions and services assessment, habitat and species conservation as well as marine spatial planning.