Nature Research, Nature Methods, 10(13), p. 833-836, 2016
DOI: 10.1038/nmeth.3961
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Sample heterogeneity often masks DNA methylation signatures in subpopulations of cells. Here, we present a method to genotype single cells while simultaneously interrogating gene expression and DNA methylation at multiple loci. We used this targeted multimodal approach, implemented on an automated, high-throughput microfluidic platform, to assess primary lung adenocarcinomas and human fibroblasts undergoing reprogramming by profiling epigenetic variation among cell types identified through genotyping and transcriptional analysis. Nat Methods 2016 Oct; 13(10):833-6.