Published in

Oxford University Press, Bioinformatics, 8(33), p. 1253-1254, 2017

DOI: 10.1093/bioinformatics/btw812

Links

Tools

Export citation

Search in Google Scholar

SED-ML Web Tools: Generate, modify and export standard-compliant simulation studies

Journal article published in 2016 by Frank T. Bergmann ORCID, David Nickerson ORCID, Dagmar Waltemath ORCID, Martin Scharm
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

Full text: Download

Green circle
Preprint: archiving allowed
Orange circle
Postprint: archiving restricted
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

Abstract Summary The Simulation Experiment Description Markup Language (SED-ML) is a standardized format for exchanging simulation studies independently of software tools. We present the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The Web Tools implement all current SED-ML specifications and, thus, support complex modifications and co-simulation of models in SBML and CellML formats. Ultimately, the Web Tools lower the bar on working with SED-ML documents and help users create valid simulation descriptions. Availability and Implementation http://sysbioapps.dyndns.org/SED-ML_Web_Tools/.