Published in

Humana Press, Methods in Molecular Biology, p. 241-261, 2015

DOI: 10.1007/978-1-4939-2392-2_14

Links

Tools

Export citation

Search in Google Scholar

Using Solutes and Kinetics to Probe Large Conformational Changes in the Steps of Transcription Initiation

Book chapter published in 2015 by Emily F. Ruff ORCID, Wayne S. Kontur, M. Thomas Record
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

Full text: Download

Green circle
Preprint: archiving allowed
Green circle
Postprint: archiving allowed
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

Small solutes are useful probes of large conformational changes in RNA polymerase (RNAP)-promoter interactions and other biopolymer processes. In general, a large effect of a solute on an equilibrium constant (or rate constant) indicates a large change in water-accessible biopolymer surface area in the corresponding step (or transition state), resulting from conformational changes, interface formation, or both. Here, we describe nitrocellulose filter binding assays from series used to determine the urea dependence of open complex formation and dissociation with Escherichia coli RNAP and λPR promoter DNA. Then, we describe the subsequent data analysis and interpretation of these solute effects.