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Proceedings of the 2012 SIAM International Conference on Data Mining, p. 1141-1150

DOI: 10.1137/1.9781611972825.98

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Feature selection for high-dimensional integrated data

This paper is available in a repository.
This paper is available in a repository.

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Abstract

Motivated by the problem of identifying correlations between genes or features of two related biological systems, we propose a model of \emph{feature selection} in which only a subset of the predictors $X_t$ are dependent on the multidimensional variate $Y$, and the remainder of the predictors constitute a "noise set" $X_u$ independent of $Y$. Using Monte Carlo simulations, we investigated the relative performance of two methods: thresholding and singular-value decomposition, in combination with stochastic optimization to determine "empirical bounds" on the small-sample accuracy of an asymptotic approximation. We demonstrate utility of the thresholding and SVD feature selection methods to with respect to a recent infant intestinal gene expression and metagenomics dataset. ; Comment: Submitted