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Elsevier, Molecular and Cellular Proteomics, 7(11), p. M111.014381-1-M111.014381-10, 2012

DOI: 10.1074/mcp.m111.014381

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The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

Journal article published in 2012 by Andrew R. Jones, Martin Eisenacher, Gerhard Mayer, Oliver Kohlbacher ORCID, Jennifer Siepen, Simon J. Hubbard, Julian N. Selley, Brian C. Searle, James Shofstahl, Sean L. Seymour, Randall Julian, Pierre-Alain Binz ORCID, Eric W. Deutsch ORCID, Henning Hermjakob, Florian Reisinger and other authors.
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

We report the release of mzIdentML, an exchange standard for peptide and protein identification data, designed by the Proteomics Standards Initiative. The format was developed by the Proteomics Standards Initiative in collaboration with instrument and software vendors, and the developers of the major open-source projects in proteomics. Software implementations have been developed to enable conversion from most popular proprietary and open-source formats, and mzIdentML will soon be supported by the major public repositories. These developments enable proteomics scientists to start working with the standard for exchanging and publishing data sets in support of publications and they provide a stable platform for bioinformatics groups and commercial software vendors to work with a single file format for identification data.