Published in
Oxford University Press (OUP), Bioinformatics, 20(25), p. 2734-2736
DOI: 10.1093/bioinformatics/btp489
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- [www.ncbi.nlm.nih.gov] | PDF
- [www.researchgate.net] | PDF
- [www.ncbi.nlm.nih.gov] | PDF
- [www.ncbi.nlm.nih.gov] | PDF
- [europepmc.org] | PDF
Tools
YADA: a tool for taking the most out of high-resolution spectra
Journal article published in 2009 by
Paulo C. Carvalho,
Tao Xu,
Xuemei Han,
Daniel Cociorva,
Valmir C. Barbosa 
,
John R. Yates
,
John R. Yates
This paper is made freely available by the publisher.
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Abstract
Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data.