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Oxford University Press (OUP), Bioinformatics, 10(28), p. 1411-1412

DOI: 10.1093/bioinformatics/bts157

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CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human

Journal article published in 2012 by Bo Qin, Meng Zhou ORCID, Ying Ge, Len Taing, Tao Liu, Qian Wang, Su Wang, Junsheng Chen, Lingling Shen, Xikun Duan, Sheng'en Hu, Wei Li, Henry Long, Yong Zhang, X. Shirley Liu and other authors.
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Summary: Transcription and chromatin regulators, and histone modifications play essential roles in gene expression regulation. We have created CistromeMap as a web server to provide a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human. We have also manually curated metadata to ensure annotation consistency, and developed a user-friendly display matrix for quick navigation and retrieval of data for specific factors, cells and papers. Finally, we provide users with summary statistics of ChIP-Seq and DNase-Seq studies.