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Seven newly identified loci for autoimmune thyroid disease

Journal article published in 2012 by M. Warren-Perry, N. A. Watkins, J. Webster, M. N. Weedon, A. G. Wilson, M. Woodburn, C. Yau, A. H. Young, E. Zeggini, J. Worthington, Cooper Jd, Simmonds Mj, Walker Nm, I. Nicol Ferrier, R. Gwilliam and other authors.
This paper is available in a repository.
This paper is available in a repository.

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Abstract

Autoimmune thyroid disease (AITD), including Graves' disease (GD) and Hashimoto's thyroiditis (HT), is one of the most common of the immune-mediated diseases. To further investigate the genetic determinants of AITD, we conducted an association study using a custom-made single-nucleotide polymorphism (SNP) array, the ImmunoChip. The SNP array contains all known and genotype-able SNPs across 186 distinct susceptibility loci associated with one or more immune-mediated diseases. After stringent quality control, we analysed 103 875 common SNPs (minor allele frequency >0.05) in 2285 GD and 462 HT patients and 9364 controls. We found evidence for seven new AITD risk loci (P < 1.12 × 10(-6); a permutation test derived significance threshold), five at locations previously associated and two at locations awaiting confirmation, with other immune-mediated diseases.