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Wiley, Chirality, 12(25), p. 840-851, 2013

DOI: 10.1002/chir.22224

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Stereochemical Preference of 2'-Deoxycytidine for Chiral Bis(diamido)-bridged Basket Resorcin[4]arenes

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Bis(diamido)-bridged basket resorcin[4]arene and its enantiomer proved able to interact with 2'-deoxycytidine () and pyrimidine nucleoside analogs in dimethyl sulfoxide (DMSO) solution. In such a solvent, the resorcinarene hosts adopt a preferential 1,3-alternate-like conformation, with a larger cavity delimited by two syn 3,5-dimethoxyphenyl moieties, and two external pockets, each delimited by the other 3,5-dimethoxyphenyl group and its diamido arm (the wing). Complexation phenomena were investigated by nuclear magnetic resonance (NMR) methods, including (1) H NMR DOSY and 1D ROESY experiments, and molecular modeling. Heteroassociation constants of [] and [] diastereoisomeric complexes were obtained from diffusion data by single point measurements, and from nonlinear fitting of (1) H NMR chemical shifts. Selective proton relaxation rate measurements allowed us to significantly discriminate the two complexes by identifying two different interaction sites of the guest in the resorcin[4]arene host, depending on its configuration.