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American Institute of Physics, The Journal of Chemical Physics, 11(140), p. 115101

DOI: 10.1063/1.4867465

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More than the sum of its parts: Coarse-grained peptide-lipid interactions from a simple cross-parametrization

Journal article published in 2014 by Tristan Bereau ORCID, Zun-Jing Wang, Markus Deserno
This paper is available in a repository.
This paper is available in a repository.

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Abstract

Interfacial systems are at the core of fascinating phenomena in many disciplines, such as biochemistry, soft-matter physics, and food science. However, the parametrization of accurate, reliable, and consistent coarse-grained (CG) models for systems at interfaces remains a challenging endeavor. In the present work, we explore to what extent two independently developed solvent-free CG models of peptides and lipids—of different mapping schemes, parametrization methods, target functions, and validation criteria—can be combined by only tuning the cross-interactions. Our results show that the cross-parametrization can reproduce a number of structural properties of membrane peptides (for example, tilt and hydrophobic mismatch), in agreement with existing peptide-lipid CG force fields. We find encouraging results for two challenging biophysical problems: (i) membrane pore formation mediated by the cooperative action of several antimicrobial peptides, and (ii) the insertion and folding of the helix-forming peptide WALP23 in the membrane.