The Bay of Bengal (BOB) is known to possess complex thermodynamics which show distinct seasonal patterns. Surface heat fluxes in the BOB are very much dependant on upper ocean heat exchanges and wind. Sensible heat flux (SHF) is also one among those fluxes that depends on air-sea temperature difference and wind. However, this study further proves that a strong relationship exists between barrier layer thickness (BLT) and SHF variability that has not been focussed on in earlier literatures. This study also investigates the seasonal as well as inter-annual variability of SHF and its relationship with BLT and sea surface temperature (SST) patterns in more detail with statistical analyses. It is found that both SST and BLT are responsible for the evolution of SHF signal in the BOB although their effects are spatially distributed. During the post monsoon period, freshwater induced enhanced BLT is more related to SHF than the summer time when effect of SST is found to be dominant. During Indian Ocean Dipole (IOD) years, the correlation between SHF and BLT in the eastern BOB is more pronounced compared to SHF and SST. The western BOB however is dominated by SST variations for the respective IOD phase which also contribute to SHF signals there. Northernmost BOB shows high standard deviation due to river discharge effects.