This study aimed to investigate the effects of three dominant mangrove species (Avicennia marina, Aegiceras corniculatum, and Kandelia obovata) on the distribution of the metal elements Fe, Mn, Cu, and Zn and the enzymes urease, phosphatase, polyphenol oxidase, and catalase. Concentrations of the metallic elements and enzymatic activities were quantified in soils under the three mangrove species in the Quanzhou Bay estuarine wetland, a typical coastal wetland in China. Results showed that A. corniculatum promoted aggregation of Mn, urease, and phosphatase, while K. obovata contributed to accumulation of Cu, urease, and phosphatase. Furthermore, A. marina induced activation of Zn and accumulation of urease, phosphatase, and catalase. The characteristic enzyme and metal distributions induced by the different mangrove species are likely to result from different planting times, root systems, and soil pH and salinity. Moreover, the three mangrove species were found to influence the diversity of elemental and enzymatic stoichiometry through differences in the soil microenvironment, which can promote biodiversity in wetland ecosystems. These findings provide a useful guideline to develop strategies for restoration of estuarine wetlands.