Denitrification is the main process removing nitrate in river drainage basins and buffer input from agricultural land and limits aquatic ecosystem pollution. However, the identification of denitrification hotspots (for example, riparian zones), their role in a landscape context and the evolution of their overall removal capacity at the drainage basin scale are still challenging. The main approaches used (that is, mass balance method, denitrification proxies, and potential wetted areas) suffer from methodological drawbacks. We review these approaches and the key frameworks that have been proposed to date to formalize the understanding of the mechanisms driving denitrification: (i) Diffusion versus advection pathways of nitrate transfer, (ii) the biogeochemical hotspot, and (iii) the Damköhler ratio. Based on these frameworks, we propose to use high-resolution mapping of catchment topography and landscape pattern to define both potential denitrification sites and the dynamic hydrologic modeling at a similar spatial scale (