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Wiley Open Access, Human Brain Mapping, 5(27), p. 402-410, 2006

DOI: 10.1002/hbm.20251

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Combined permutation test and mixed-effect model for group average analysis in fMRI

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

In group average analyses, we generalize the classical one-sample t test to account for heterogeneous within-subject uncertainties associated with the estimated effects. Our test statistic is defined as the maximum likelihood ratio corresponding to a Gaussian mixed-effect model. The test's significance level is calibrated using the same sign permutation framework as in Holmes et al., allowing for exact specificity control under a mild symmetry assumption about the subjects' distribution. Because our likelihood ratio test does not rely on homoscedasticity, it is potentially more sensitive than both the standard t test and its permutation-based version. We present results from the Functional Imaging Analysis Contest 2005 dataset to support this claim.