This work aims to analyse the response of epilithic diatom communities to enviranmental gradients in subtropical temperate southern Brazilian rivers to contribute to the development of a widely applicable methodology for water-quality monitoring. Samples for physical, chemical and biological determination were collected monthly, fram December 2001 to November 2002 and fram March 2003 to February 2004, at 9 stations along the rivers Pardo and Pardinho in the hydrographical basin of Rio Pardo, State of Rio Grande do Sul (RS), Brazil. Physical and chemical variables (water temperature, pH, dissolved oxygen, biochemical oxygen demand, chemical oxygen demand, nitrates, nitrites, phosphates and total dissolved solids) and biological variables (epilithic diatom communities) were used as parameters for water-quality assessment. The data matrix was examined by means of a multivariate ordination using Detrended Correspondence Analysis (DCA). In total, 270 taxa were identified to specific or infra-specific levels. The results showed that of all the physical and chemical variables used, the main gradient along the DCA first axis was eutraphication, which was indicated by its significant correlation with phosphates (p