We used morphological analysis to assess species composition of natural regenerations and progeny plantations established from two mixed oak stands in Jamy and Legnica, Poland. Despite equal proportions of pedunculate (Quercus robur) and sessile oak (Quercus petrea) in seed stands, the species composition differed strikingly. In all progeny populations, pedunculate oak dominated, reaching 89.5% and 96.6% in Legnica and Jamy, respectively. However, sessile oak predominated in natural regenerations. Morphological studies indicated a varied number of phenotypically intermediate or mosaic individuals. Among artificial populations, the highest number of putative hybrids was observed in Legnica (average 2.5%) and the lowest in Jamy (average 0.2%). Hybrids in natural regeneration were 1% in Legnica and 8% in Jamy. The disproportionate species composition could result from either unintentional indirect acorn selection during collection or selection in nursery practice. We discuss the role of ecophysiological differences between species in biased species representation in progeny populations.