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Springer, Bulletin of Mathematical Biology, 2(57), p. 247-276, 1995

DOI: 10.1007/bf02460618

Springer (part of Springer Nature), Bulletin of Mathematical Biology, 2(57), p. 247-276

DOI: 10.1016/0092-8240(94)00036-c

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Dynamical behaviour of biological regulatory networks—I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state

Journal article published in 1995 by René Thomas, Denis Thieffry, Marcelle Kaufman
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

In the field of biological regulation, models dictated by experimental work are usually complex networks comprising intertwined feedback loops. In this paper the biological roles of individual positive loops (multistationarity, differentiation) and negative loops (homeostasis, with or without oscillations, buffering of gene dosage effect) are discussed. The relationship between feedback loops and steady states is then clarified, and the problem: "How can one conveniently disentangle complex networks?" is then considered. Initiated long ago, logical descriptions have been generalized from various viewpoints; these developments are briefly discussed. The recent concept of the loop-characteristic state, defined as the logical state located at the level of the thresholds involved in the loop, together with its application, are then presented. Biological applications are also discussed.