Published in

Oxford University Press, Journal of Experimental Botany, 22(65), p. 6711-6721, 2014

DOI: 10.1093/jxb/eru395

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From museums to genomics: Old herbarium specimens shed light on a C3 to C4 transition

This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Collections of specimens held by natural history museums are invaluable material for biodiversity inventory and evolu-tionary studies, with specimens accumulated over 300 years readily available for sampling. Unfortunately, most museum specimens yield low-quality DNA. Recent advances in sequencing technologies, so called next-generation sequencing, are revolutionizing phylogenetic investigations at a deep level. Here, the Illumina technology (HiSeq) was used on her-barium specimens of Sartidia (subfamily Aristidoideae, Poaceae), a small African–Malagasy grass lineage (six species) characteristic of wooded savannas, which is the C3 sister group of Stipagrostis, an important C4 genus from Africa and SW Asia. Complete chloroplast and nuclear ribosomal sequences were assembled for two Sartidia species, one of which (S. perrieri) is only known from a single specimen collected in Madagascar 100 years ago. Partial sequences of a few sin-gle-copy genes encoding phosphoenolpyruvate carboxylases (ppc) and malic enzymes (nadpme) were also assembled. Based on these data, the phylogenetic position of Malagasy Sartidia in the subfamily Aristidoideae was investigated and