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Oxford University Press (OUP), Bioinformatics, 8(19), p. 966-972

DOI: 10.1093/bioinformatics/btg107

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Approximate variance-stabilizing transformations for gene-expression microarray data

Journal article published in 2003 by David M. Rocke ORCID, Blythe Durbin
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

MOTIVATION: A variance stabilizing transformation for microarray data was recently introduced independently by several research groups. This transformation has sometimes been called the generalized logarithm or glog transformation. In this paper, we derive several alternative approximate variance stabilizing transformations that may be easier to use in some applications. RESULTS: We demonstrate that the started-log and the log-linear-hybrid transformation families can produce approximate variance stabilizing transformations for microarray data that are nearly as good as the generalized logarithm (glog) transformation. These transformations may be more convenient in some applications.