Cultured and native brown mussels (Perna perna Linnaeus 1758) were used to evaluate the contamination by PAHs in the SE Brazilian coastal zone. Mean concentrations of total PAH (38 parental and alkylated compounds) and cluster analysis revealed that: (i) mussel farms (32.7-70.1ngg(-1)) are located in uncontaminated areas; (ii) coastal rockyshore areas (89.7±25.8ngg(-1)) have low level of contamination; and (iii) the Guanabara Bay (760.9±456.3ngg(-1)) is chronically contaminated by hydrocarbons, which is consistent with previous results. PAH profiles and diagnostic ratios suggested mixed petrogenic and pyrolitic sources for group (ii) and petrogenic sources for group (iii). The levels of PAH in the cultured and native mussels are below threshold values for safe food, even in Guanabara Bay, and thus in such cases other contaminants and pathogens should be considered in order to evaluate the quality of shellfish for human consumption.