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Elsevier, Journal of Theoretical Biology, (347), p. 44-53, 2014

DOI: 10.1016/j.jtbi.2014.01.015

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A simple model of NF - κ B dynamics reproduces experimental observations

Journal article published in 2014 by Samuel Zambrano, Alessandra Agresti ORCID, Marco E. Bianchi
This paper is available in a repository.
This paper is available in a repository.

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Abstract

The mathematical modeling of the NF-κB oscillations has attracted considerable attention in recent times, but there is a lack of simple models in the literature that can capture the main features of the dynamics of this important transcription factor. For this reason we propose a simple model that summarizes the key steps of the NF-κB pathway. We show that the resulting 5-dimensional dynamical system can reproduce different phenomena observed in experiments. Our model can display smooth and spiky oscillations in the amount of nuclear NF-κB and can reproduce the variety of dynamics observed when different stimulations such as TNF-α and LPS are used. Furthermore we show that the model can be easily extended to reproduce the expression of early, intermediate and late genes upon stimulation. As a final example we show that our simple model can mimic the different transcriptional outputs observed when cells are treated with two different drugs leading to nuclear localization of NF-κB: Leptomycin B and Cycloheximide.