This work analysed the carbon sequestration potential in two species of mangroves (Rhizophora mucronata and Avicennia marina) along with their growth, biomass, sediment characteristics for four seasons of the year 2009–2010, in planted stands of different age (1–17.5 years) in the Vellar-Coleroon estuarine complex, India. The mangroves were recorded to store significant amount of biomass. Avicennia marina performed better to display 75 % higher rate of carbon sequestration than that in Rhizophora mucronata. This could be attributed to growth efficiency and high biomass production. For instance, Avicennia marina exhibited 2.7 fold higher girth, 24 % higher net canopy photosynthesis, 2 fold aboveground biomass (AGB), 40 % more belowground biomass (BGB) and 77.3 % higher total biomass, than R. mucronata did. Seasonally the rate of carbon sequestration was 7.3 fold higher in post-monsoon, 3.4 fold in monsoon, 73 % more in summer than that in pre-monsoon. The rate of carbon sequestration was positively correlated with age of planted site, tree height, tree diameter, net canopy photosynthesis, AGB, BGB, total biomass, carbon stock, growth efficiency, AGB/tree height tree girth, leaf area index, silt content (p < 0.01). The carbon sequestration was negatively corrected with soil temperature and clay content (p < 0.05). Mangroves were found to be a productive system and important sink of carbon in the tropical coastal zone, but increasing soil temperature due to global warming would have a negative impact on carbon sequestration potential of the mangroves.