Biliary excretion of organic anions such as bile acids (BAs) is the main osmotic driving force for bile formation, and its impairment induces intrahepatic cholestasis. We investigated the involvement of Atp11c in the hepatic transport of organic anions using Atp11c mutant mice, which exhibit hypercholanemia and hyperbilirubinemia. Pharmacokinetic analysis following a constant intravenous infusion in Atp11c mutant mice showed decreased hepatic sinusoidal uptake and intact biliary secretion of [(3)H]-17β estradiol 17β-D-glucuronide ([(3)H]-E217βG). Consistent with this result, compared with cells and membranes from control mice, isolated hepatocytes and liver plasma membranes (LPMs) from Atp11c mutant mice had a much lower uptake of [(3)H]-E217βG and expression of organic anion-transporting polypeptides (Oatps), which are transporters responsible for hepatic uptake of unconjugated BAs and organic anions including bilirubin - glucuronides. Uptake of [(3)H]-TC into hepatocytes and expression of Na(+)-taurocholate cotransporting polypeptide in LPMs, which mediates hepatic uptake of conjugated BAs, was also lower in the Atp11c mutant mice. Bile flow rate, biliary BA concentration, and expression of hepatobiliary transporters did not differ between Atp11c mutant mice and control mice. These results suggest that Atp11c mediates the transport of BAs and organic anions across the sinusoidal membrane, but not the canalicular membrane, by regulating the abundance of transporters. Atp11c is a candidate gene for genetically undiagnosed cases of hypercholanemia and hyperbilirubinemia but not of intrahepatic cholestasis. This gene may influence the pharmacological and adverse effect of drugs because Oatps regulate their systemic exposure.