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Springer, Protein Journal, 4(29), p. 242-249, 2010

DOI: 10.1007/s10930-010-9245-5

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ω-Helices in Proteins

Journal article published in 2010 by Purevjav Enkhbayar, Bazartseren Boldgiv ORCID, Norio Matsushima
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

A modification of the alpha-helix, termed the omega-helix, has four residues in one turn of a helix. We searched the omega-helix in proteins by the HELFIT program which determines the helical parameters-pitch, residues per turn, radius, and handedness-and p = rmsd/(N - 1)(1/2) estimating helical regularity, where "rmsd" is the root mean square deviation from the best fit helix and "N" is helix length. A total of 1,496 regular alpha-helices 6-9 residues long with p < or = 0.10 A were identified from 866 protein chains. The statistical analysis provides a strong evidence that the frequency distribution of helices versus n indicates the bimodality of typical alpha-helix and omega-helix. Sixty-two right handed omega-helices identified (7.2% of proteins) show non-planarity of the peptide groups. There is amino acid preference of Asp and Cys. These observations and analyses insist that the omega-helices occur really in proteins.