In 2010, the parties of the Convention on Biological Diversity (CBD) adopted the Strategic Plan for Biodiversity 2011-2020 with the mission of halting biodiversity loss and enhance the benefits it provides to people. The 20 Aichi Biodiversity Targets (Aichi Targets), which are included in the Strategic Plan, are organized under five Strategic Goals, and provide coherent guidance on how to achieve it. Halfway through the Strategic Plan, it is time to prioritize actions in order to achieve the best possible outcomes for the Aichi Targets in 2020. Actions to achieve one target may influence other targets (downstream interactions); in turn a target may be influenced by actions taken to attain other targets (upstream interactions). We explore the interactions among targets and the time-lags between implemented measures and desired outcomes to develop a framework that can reduce the overall burden associated with the implementation of the Strategic Plan. We identified the targets addressing the underlying drivers of biodiversity loss and the targets aimed at enhancing the implementation of the Strategic Plan as having the highest level of downstream interactions. Targets aimed at improving the status of biodiversity and safeguarding ecosystems followed by targets aimed at reducing the direct pressures on biodiversity and enhancing the benefits to all from biodiversity and ecosystem services, were identified as having the highest levels of upstream interactions. Perhaps one of the most challenging aspects of the Strategic Plan is the need to balance actions for its long-term sustainability with the need for urgent actions to halt biodiversity loss.