Published in
Oxford University Press (OUP), Bioinformatics, 17(29), p. 2208-2210
DOI: 10.1093/bioinformatics/btt371
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- Oxford University Press (OUP) | PDF
- [www.ncbi.nlm.nih.gov] | PDF
- [www.researchgate.net] | PDF
- [www.ncbi.nlm.nih.gov] | PDF
- [www.ncbi.nlm.nih.gov] | PDF
Tools
Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes
Journal article published in 2013 by
Mamunur Rashid 
,
Carla Daniela Robles-Espinoza,
Alistair G. Rust,
David J. Adams
,
Carla Daniela Robles-Espinoza,
Alistair G. Rust,
David J. Adams
This paper is made freely available by the publisher.
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Abstract
Summary: We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a stand-alone application.