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Oxford University Press (OUP), Bioinformatics, 17(29), p. 2206-2207

DOI: 10.1093/bioinformatics/btt367

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Pipit: visualizing functional impacts of structural variations

Journal article published in 2013 by Ryo Sakai, Matthieu Moisse ORCID, Joke Reumers, Jan Aerts
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Summary: Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instance, the deletion of dosage-sensitive genes or the formation of fusion genes. Pipit is a cross-platform Java application that visualizes structural variation data from Genome Variation Format files.