Biological feedback mechanisms regulate fundamental ecosystem processes and potentially regulate ecosystem productivity. To date, no studies have documented the down-regulation of terrestrial nitrogen (N) fixation via an ecosystem-level feedback mechanism. Herein, we demonstrate such a feedback in boreal forests. Rapid cycling of N in early secondary succession forests yielded greater throughfall N deposition, which in turn decreased N fixation by cyanobacterial associates in feather moss carpets that reside on the forest floor. The forest canopy exerts a tight control on biotic N input at a period of high productivity.