We report on numerical experiments to test the sensitivity of Lagrangian coherent structures (LCSs), found by identifying ridges of the finite-time Lyapunov exponent (FTLE), to errors in two systems representing the California Current System (CCS). First, we consider a synthetic mesoscale eddy field generated from Fourier filtering satellite altimetry observations of the CCS. Second, we consider the full observational satellite altimetry field in the same region. LCS are found to be relatively insensitive to both sparse spatial and temporal resolution and to the velocity field interpolation method. Strongly attracting and repelling LCS are robust to perturbations of the velocity field of over 20% of the maximum regional velocity. Contours of the Okubo–Weiss (OW) parameter are found to be consistent with LCS in large mature eddies in the unperturbed systems. The OW parameter is unable to identify eddies at the uncertainty level expected for altimetry observations of the CCS. At this expected error level, the FTLE method is reliable for locating boundaries of large eddies and strong jets. Small LCS features such as lobes are not well resolved even at low error levels, suggesting that reliable determination of lobe dynamics from altimetry will be problematic.