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American Chemical Society, Nano Letters, 5(13), p. 2247-2251, 2013

DOI: 10.1021/nl4008198

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The Intrinsic Role of Nanoconfinement in Chemical Equilibrium: Evidence from DNA Hybridization

Journal article published in 2013 by Leonid Rubinovich ORCID, Micha Polak
This paper is available in a repository.
This paper is available in a repository.

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Abstract

Recently we predicted that when a reaction involving a small number of molecules occurs in a nanometric-scale domain entirely segregated from the surrounding media, the nanoconfinement can shift the position of equilibrium towards products via reactant-product reduced mixing. In this letter we demonstrate how most-recently reported single-molecule fluorescence measurements of partial hybridization of ssDNA confined within nanofabricated chambers provide the first experimental confirmation of this entropic nanoconfinement effect. Thus, focusing separately on each occupancy-specific equilibrium constant, quantitatively reveals extra stabilization of the product upon decreasing the chamber occupancy or size. Namely, the DNA hybridization under nanoconfined conditions is significantly favored over the identical reaction occurring in bulk media with the same reactant concentrations. This effect, now directly verified for DNA, can be relevant to actual biological processes, as well as to diverse reactions occurring within molecular capsules, nano-tubes and other functional nanospaces.