Dissemin is shutting down on January 1st, 2025

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Nature Research, Nature Methods, 7(9), p. 676-682, 2012

DOI: 10.1038/nmeth.2019

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Fiji: an open-source platform for biological-image analysis

Journal article published in 2012 by Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld ORCID, Benjamin Schmid, Jean-Yves Tinevez ORCID, Daniel James White, Volker Eliceiri Kevin Hartenstein, Kevin Eliceiri, Pavel Tomanč́ak and other authors.
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.