Heavy metal concentrations in surface sediments at 56 stations during two cruises in the Yellow Sea in summer and winter, 2011 were analyzed by inductively coupled plasma-mass spectrometry. The pollution status was assessed via the Geoaccumulation index and Hankanson potential ecological risk index. Higher concentrations of heavy metals (except for Mn) were found in the central Southern Yellow Sea and the western Northern Yellow Sea. The higher contents of Mn were much closer to Shandong Peninsula. Correlation analyses indicated that Pb, Cu, Fe, Ni, Zn and Co probably had the same origin and were controlled by grain size and total organic carbon. Pollution assessment showed that most areas of the Yellow Sea were not or lowly contaminated with the exception of the northwest and south parts of the Southern Yellow Sea showing Cd-contamination. The pollution status of the Yellow Sea in summer was worse than that in winter.